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[174544_at] ankyrin repeats

Description CEC8693_rc /REP_DB=TREMBL Accession /GB=C10869 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk155g2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 19      4grp_highest_8_8 > 42      4grp_high_8_8 > 40      6grp_highest_nonorm > 70      6grp_total > 05      4grp_total > 55      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 310
(3)
P 		247
(0.4)
P 		305.8
(2.8)
P 		162
(-3)
P 		148
B 354.6
(3)
P 		248.2
(-0.3)
P 		158.6
(-3)
P 		244.3
(-0.4)
P 		196
C 433.1
(3)
P 		262.4
(-1.8)
P 		302.8
(-0.6)
P 		218.2
(-3)
P 		215
avr 365.9
(3) 		252.5
(-1.3) 		255.7
(-1.2) 		208.2
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 392.2
(3)
P 		351.6
(1.9)
P 		322.2
(1.1)
P 		227.7
(-1.5)
P 		325.4
(1.2)
P 		173.6
(-3)
P 		219
B 514.2
(3)
P 		337.8
(-0.4)
P 		199
(-3)
P 		235.3
(-2.3)
P 		276.8
(-1.5)
P 		252.7
(-2)
P 		315
C 469.7
(3)
P 		303.1
(-0.3)
P 		195.1
(-2.4)
P 		237.2
(-1.6)
P 		421.3
(2.1)
P 		163.6
(-3)
P 		306
avr 458.7
(3) 		330.8
(0.1) 		238.8
(-2) 		233.4
(-2.2) 		341.2
(0.3) 		196.6
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 112.9
(3)
P 		53.6
(-1)
P 		79.9
(0.8)
P 		23.7
(-3)
P 		89
B 113.1
(3)
P 		61.3
(-1.1)
P 		36.8
(-3)
P 		52.1
(-1.8)
P 		76
C 143.4
(3)
P 		75.4
(-0.8)
P 		105.5
(0.9)
P 		36.8
(-3)
P 		107
avr 123.1
(3) 		63.4
(-1.2) 		74.1
(-0.4) 		37.5
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 72.3
(-0.8)
P 		125.1
(3)
P 		70.2
(-1)
P 		57.8
(-1.9)
P 		98.2
(1.1)
P 		42.3
(-3)
P 		83
B 178.9
(3)
P 		112.5
(-0.1)
P 		48.3
(-3)
P 		62.3
(-2.4)
P 		112.5
(-0.1)
P 		94.2
(-0.9)
P 		131
C 174.1
(3)
P 		92.5
(-0.9)
P 		49.7
(-2.9)
P 		47.7
(-3)
P 		136.3
(1.2)
P 		54.8
(-2.7)
P 		126
avr 141.8
(3) 		110
(0.8) 		56.1
(-3) 		55.9
(-3) 		115.7
(1.2) 		63.8
(-2.4) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22181
Sequence Type Exemplar sequence
Representative Public ID CEC8693 NCBI
Target Description CEC8693_rc /REP_DB=TREMBL Accession /GB=C10869 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk155g2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077219 NCBI Caenorhabditis elegans C11E4.6 (C11E4.6) mRNA, complete cds. 11/11 None
C11E4.6 ENSEMBL cdna:known chromosome:CEL140:X:9610495:9616956:1 gene:C11E4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9616607-9616885(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin repeats
Ensembl C11E4.6
Entrez Gene 181179 Entrez gene
SwissProt Q93203 EMBL-EBI
WormBase CE31411 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02658 Hypothetical protein C11E4.6 [Caenorhabditis elegans] ref|NP_509620.2| C11E4.6 [Caenorhabditis elegans] 0.0
blast CAE69786 Hypothetical protein CBG16074 [Caenorhabditis briggsae] 0.0
blast AAF56132 CG4393-PA [Drosophila melanogaster] ref|NP_651143.1| CG4393-PA [Drosophila melanogaster] 1.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.15
Pfam IPR002110 EMBL-EBI Ankyrin 0.0012
Pfam IPR002110 EMBL-EBI Ankyrin 1.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.4E-4
Pfam IPR002110 EMBL-EBI Ankyrin 4.1E-6
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 2.1E-6
Pfam IPR001660 EMBL-EBI Sterile alpha motif SAM 3.0E-15
Sequence
Target Sequence 
>C. ELEGANS:174544_AT
tcaatttaatttcctaacccgatgtcttccttacccggaaatgttttaattctagctctt
caaaagtgcattccgttgtttgatgttctttctattcttgttttcccaacaacttaattt
tcttttagcgatttcaaaccatacaaagtgatcaataaacagtattctgctgatcttacg
tattggtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTTAATTTCCTAACCCGATGT 21 635 71 Antisense
CGATGTCTTCCTTACCCGGAAATGT 259 249 90 Antisense
GGAAATGTTTTAATTCTAGCTCTTC 343 527 107 Antisense
CTAGCTCTTCAAAAGTGCATTCCGT 424 225 122 Antisense
AGTGCATTCCGTTGTTTGATGTTCT 189 59 135 Antisense
GTTTGATGTTCTTTCTATTCTTGTT 569 451 148 Antisense
TCTATTCTTGTTTTCCCAACAACTT 686 613 161 Antisense
TTCTTTTAGCGATTTCAAACCATAC 509 687 190 Antisense
TAGCGATTTCAAACCATACAAAGTG 495 647 196 Antisense
TAAACAGTATTCTGCTGATCTTACG 520 639 226 Antisense
TCTGCTGATCTTACGTATTGGTTTC 214 609 236 Antisense
Sequence Source Affymetrix Proprietary Database