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[174543_at]

Description C52262_rc /REP_DB=TREMBL Accession /GB=C52262 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk240d10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 0      6grp_total > 19      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 88.8
(3)
P 		57.3
(-1.2)
P 		60.3
(-0.8)
P 		44
(-3)
A 		45
B 61.5
(-0.5)
P 		33.1
(-3)
P 		102.6
(3)
P 		78.8
(0.9)
P 		70
C 93.2
(2.5)
P 		94.9
(3)
P 		85.4
(0.4)
P 		73.1
(-3)
M 		22
avr 81.2
(2.5) 		61.8
(-3) 		82.8
(3) 		65.3
(-2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 83.1
(1.4)
P 		69.3
(0.1)
P 		72.2
(0.3)
P 		91.9
(2.3)
P 		98.9
(3)
P 		38.6
(-3)
P 		60
B 99.7
(3)
P 		87.4
(1.9)
P 		35.4
(-3)
A 		86.2
(1.7)
P 		90.6
(2.2)
P 		81.8
(1.3)
P 		64
C 130.5
(3)
P 		75.8
(-3)
P 		83.3
(-2.2)
P 		90.4
(-1.4)
P 		88.1
(-1.7)
P 		82.1
(-2.3)
P 		55
avr 104.4
(3) 		77.5
(-1) 		63.6
(-3) 		89.5
(0.8) 		92.5
(1.3) 		67.5
(-2.4) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 32.3
(3)
P 		12.4
(-1.6)
P 		15.8
(-0.8)
P 		6.4
(-3)
A 		26
B 19.6
(1.4)
P 		8.2
(-3)
P 		23.8
(3)
P 		16.8
(0.3)
P 		16
C 30.8
(3)
P 		27.3
(1.9)
P 		29.8
(2.7)
P 		12.3
(-3)
M 		19
avr 27.6
(3) 		16
(-1.4) 		23.1
(1.3) 		11.8
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 15.3
(-1.3)
P 		24.6
(1.4)
P 		15.7
(-1.2)
P 		23.3
(1.1)
P 		29.9
(3)
P 		9.4
(-3)
P 		21
B 34.7
(2.6)
P 		29.1
(1.4)
P 		8.6
(-3)
A 		22.8
(0)
P 		36.8
(3)
P 		30.5
(1.7)
P 		28
C 48.4
(3)
P 		23.1
(-2)
P 		21.2
(-2.4)
P 		18.2
(-3)
P 		28.5
(-1)
P 		27.5
(-1.2)
P 		30
avr 32.8
(3) 		25.6
(0.5) 		15.2
(-3) 		21.4
(-0.9) 		31.7
(2.6) 		22.5
(-0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20407
Sequence Type Exemplar sequence
Representative Public ID C52262 NCBI
Target Description C52262_rc /REP_DB=TREMBL Accession /GB=C52262 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk240d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F45H11.3 ENSEMBL cdna:known chromosome:CEL140:I:10382936:10387717:1 gene:F45H11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10387327-10387611(+) 100.0 100.0
Public Domain and Genome References
Ensembl F45H11.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01710 Hypothetical protein F45H11.3 [Caenorhabditis elegans] ref|NP_492718.2| F45H11.3 [Caenorhabditis elegans] 0.0
blast CAE58929 Hypothetical protein CBG02194 [Caenorhabditis briggsae] 1.0E-176
Sequence
Target Sequence 
>C. ELEGANS:174543_AT
tgttgttttgttcagggttttggataatataatcacaattacatcgttgtttagttgttt
tgcataatcaattatttccatttccataggttttctatttctttcaaatatcgtttcaat
ccatttcattgccgtttctctaccgcctttttcctgcattctttcatttgaattgtgcat
tggagtacatatgtgaacgcattgaatttcatttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGTTTTGTTCAGGGTTTTGGAT 197 561 33 Antisense
TACATCGTTGTTTAGTTGTTTTGCA 160 645 72 Antisense
CATAATCAATTATTTCCATTTCCAT 285 213 95 Antisense
ATTTCCATTTCCATAGGTTTTCTAT 439 17 106 Antisense
TTCCATAGGTTTTCTATTTCTTTCA 364 701 114 Antisense
ATTTCTTTCAAATATCGTTTCAATC 168 17 129 Antisense
ATCGTTTCAATCCATTTCATTGCCG 228 35 142 Antisense
CTTTTTCCTGCATTCTTTCATTTGA 341 223 179 Antisense
TCTTTCATTTGAATTGTGCATTGGA 340 615 192 Antisense
GCATTGGAGTACATATGTGAACGCA 128 307 209 Antisense
GTGAACGCATTGAATTTCATTTTTT 371 481 225 Antisense
Sequence Source Affymetrix Proprietary Database