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[174542_at] Ank repeat

Description CEK006F7R_rc /REP_DB=TREMBL Accession /GB=D27137 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 18      4grp_highest_8_8 > 46      4grp_high_8_8 > 11      6grp_highest_nonorm > 02      6grp_total > 16      4grp_total > 21      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3764
1 2 3 4 range
A 4292
(1.5)
P 		2268.6
(-3)
P 		2392.3
(-2.7)
P 		4957.1
(3)
P 		2689
B 4282.9
(0.8)
P 		3005.3
(-1.3)
P 		1911.1
(-3)
P 		5675.4
(3)
P 		3764
C 3918.7
(1.5)
P 		2466.5
(-1.9)
P 		1985
(-3)
P 		4584
(3)
P 		2599
avr 4164.5
(1.2) 		2580.1
(-2) 		2096.1
(-3) 		5072.2
(3) 		2976

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2744
1 2 3 4 5 6 range
A 3737
(3)
P 		3110.8
(1)
P 		1822.9
(-3)
P 		1994.8
(-2.5)
P 		2474.4
(-1)
P 		2933.2
(0.5)
P 		1914
B 3192.2
(3)
P 		3033.4
(2.5)
P 		1299.2
(-3)
P 		2687.7
(1.4)
P 		2265.5
(0.1)
P 		1956.7
(-0.9)
P 		1893
C 4043.5
(3)
P 		2743.8
(-0.8)
P 		2645.6
(-1.1)
P 		2028
(-2.9)
P 		2257.3
(-2.3)
P 		2004.9
(-3)
P 		2039
avr 3657.6
(3) 		2962.7
(0.6) 		1922.6
(-3) 		2236.8
(-1.9) 		2332.4
(-1.6) 		2298.3
(-1.7) 		1735
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1120
1 2 3 4 range
A 1562.7
(3)
P 		492.4
(-3)
P 		625.4
(-2.3)
P 		725.6
(-1.7)
P 		1070
B 1365.8
(3)
P 		742.2
(-1.1)
P 		442.8
(-3)
P 		1209.4
(2)
P 		923
C 1297.2
(3)
P 		709.1
(-2.8)
P 		691.8
(-3)
P 		772.9
(-2.2)
P 		605
avr 1408.6
(3) 		647.9
(-2.6) 		586.7
(-3) 		902.6
(-0.7) 		822

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1183
1 2 3 4 5 6 range
A 688.9
(-0.5)
P 		1106.3
(3)
P 		397
(-3)
P 		505.9
(-2.1)
P 		746.7
(-0)
P 		714.2
(-0.3)
P 		709
B 1110.7
(3)
P 		1009.7
(2.2)
P 		315.5
(-3)
P 		711.9
(-0)
P 		920.4
(1.6)
P 		729.7
(0.1)
P 		795
C 1498.8
(3)
P 		837.2
(-0.6)
P 		673.3
(-1.5)
P 		407.8
(-3)
P 		730.4
(-1.2)
P 		671.2
(-1.6)
P 		1091
avr 1099.5
(3) 		984.4
(1.9) 		461.9
(-3) 		541.9
(-2.2) 		799.2
(0.2) 		705
(-0.7) 		638
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22276
Sequence Type Exemplar sequence
Representative Public ID CEK006F7R NCBI
Target Description CEK006F7R_rc /REP_DB=TREMBL Accession /GB=D27137 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078139 NCBI Caenorhabditis elegans C33A11.1 (C33A11.1) mRNA, complete cds. 11/11 None
C33A11.1.1 ENSEMBL cdna:known chromosome:CEL140:X:15355155:15363781:1 gene:C33A11.1 11/11 A 
C33A11.1.2 ENSEMBL cdna:known chromosome:CEL140:X:15355155:15363749:1 gene:C33A11.1 9/11 A 
C33A11.1.3 ENSEMBL cdna:known chromosome:CEL140:X:15355157:15363773:1 gene:C33A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15363310-15363759(+) 98.66 100.0
Public Domain and Genome References
Gene Title Ank repeat
Ensembl C33A11.1
Entrez Gene 181625 Entrez gene
SwissProt Q93318 EMBL-EBI
WormBase CE24824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01860 Hypothetical protein C33A11.1 [Caenorhabditis elegans] emb|CAB61033.1| Hypothetical protein C33A11.1 [Caenorhabditis elegans] ref|NP_510540.1| C33A11.1 [Caenorhabditis elegans] 0.0
blast CAE63301 Hypothetical protein CBG07688 [Caenorhabditis briggsae] 0.0
blast XP_541683 PREDICTED: similar to T-cell activation NFKB-like protein [Canis familiaris] 3.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.055
Pfam IPR002110 EMBL-EBI Ankyrin 3.4E-8
Pfam IPR002110 EMBL-EBI Ankyrin 3.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 7.6E-6
Sequence
Target Sequence 
>C. ELEGANS:174542_AT
tgttcatttttccttacaacgaccgttaagctattccactcaacgattgttaagtctaca
gttcaacctctcaattgaatattgaaaataattatttaaaacgtttacacctccaacttc
aacgtagtttctcgttcacattctgaagtatatgctagttgctggtacataaagtccatc
tcattcctttttttcttttcttatttcacgtttttaccttctccactccccttcctctct
ctctctcgaaattttgtgctatattccccgtactaggtggtacaacgtcacagtttctct
gttcacccatccccttcaatattccttcatttttcacaaaaacaagcagcttctgtcatt
tttcgcatttttattctttgttgctaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCATTTTTCCTTACAACGACCG 695 561 39 Antisense
ACAACGACCGTTAAGCTATTCCACT 235 111 54 Antisense
AAGTCTACAGTTCAACCTCTCAATT 433 157 90 Antisense
TTTACACCTCCAACTTCAACGTAGT 304 671 142 Antisense
CGTAGTTTCTCGTTCACATTCTGAA 49 247 161 Antisense
GGTACATAAAGTCCATCTCATTCCT 3 505 202 Antisense
GCTATATTCCCCGTACTAGGTGGTA 551 293 296 Antisense
CAACGTCACAGTTTCTCTGTTCACC 661 187 321 Antisense
CAATATTCCTTCATTTTTCACAAAA 337 177 355 Antisense
AAGCAGCTTCTGTCATTTTTCGCAT 470 149 382 Antisense
GCATTTTTATTCTTTGTTGCTAACC 152 309 403 Antisense
Sequence Source Affymetrix Proprietary Database