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[174540_s_at]

Description CEC3334_rc /REP_DB=TREMBL Accession /GB=C11333 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk171h5 : 3prime end, single read.
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 4.3
(-2.9)
A 		5.7
(-2.7)
A 		2.7
(-3)
A 		71.8
(3)
A 		69
B 5.8
(3)
A 		3.1
(-3)
A 		5.6
(2.6)
A 		5.5
(2.3)
A 		3
C 8.9
(-2.4)
A 		5.4
(-3)
A 		6.5
(-2.8)
A 		38.9
(3)
A 		34
avr 6.3
(-2.7) 		4.7
(-3) 		4.9
(-3) 		38.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 4.5
(-3)
A 		2.8
(-3)
A 		2.2
(-3)
A 		4.5
(-3)
A 		94.3
(-1.4)
P 		353.1
(3)
P 		351
B 4.2
(-3)
A 		3.6
(-3)
A 		10.3
(-2.9)
A 		4.3
(-3)
A 		153.8
(-0.2)
P 		329.4
(3)
P 		326
C 4.3
(-3)
A 		2.8
(-3)
A 		4.8
(-3)
A 		6
(-3)
A 		59.3
(-2.1)
P 		387.4
(3)
P 		385
avr 4.3
(-3) 		3.1
(-3) 		5.8
(-3) 		4.9
(-3) 		102.5
(-1.3) 		356.6
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.6
(-2.4)
A 		1.2
(-2.7)
A 		0.7
(-3)
A 		10.5
(3)
A 		10
B 1.8
(3)
A 		0.8
(-3)
A 		1.3
(0)
A 		1.2
(-0.6)
A 		1
C 3
(-1.2)
A 		1.5
(-3)
A 		2.3
(-2.1)
A 		6.6
(3)
A 		5
avr 2.1
(-1.9) 		1.2
(-3) 		1.4
(-2.8) 		6.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1
(-3)
A 		0.5
(-3)
A 		1.1
(-3)
A 		28.5
(-1)
P 		86
(3)
P 		86
B 1.5
(-3)
A 		1.2
(-3)
A 		2.5
(-2.9)
A 		1.1
(-3)
A 		62.5
(0)
P 		122.8
(3)
P 		122
C 1.6
(-3)
A 		0.8
(-3)
A 		1.2
(-3)
A 		1.2
(-3)
A 		19.2
(-2.1)
P 		129.7
(3)
P 		129
avr 1.3
(-3) 		1
(-3) 		1.4
(-3) 		1.1
(-3) 		36.7
(-1.1) 		112.8
(3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174540_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20066
Sequence Type Exemplar sequence
Representative Public ID CEC3334 NCBI
Target Description CEC3334_rc /REP_DB=TREMBL Accession /GB=C11333 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk171h5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058875(11), NM_058876(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058875 NCBI Caenorhabditis elegans F47B3.7 (F47B3.7) mRNA, complete cds. 11/11 A 
NM_058876 NCBI Caenorhabditis elegans F47B3.2 (F47B3.2) mRNA, complete cds. 11/11 A 
GENEFINDER00000030473 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3963117:3969943:-1 11/11 None
SNAP00000030468 ENSEMBL cdna:SNAP chromosome:CEL140:I:3968166:3969943:-1 11/11 None
SNAP00000030469 ENSEMBL cdna:SNAP chromosome:CEL140:I:3969797:3971279:1 11/11 None
F47B3.7 ENSEMBL cdna:known chromosome:CEL140:I:3968166:3970012:-1 gene:F47B3.7 11/11 A 
F47B3.2 ENSEMBL cdna:known chromosome:CEL140:I:3970376:3971304:1 gene:F47B3.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3970876-3971294(+) 100.0 100.0
chrI:3968150-3968568(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F47B3.7
F47B3.2
Entrez Gene 171983 Entrez gene
185885 Entrez gene
SwissProt Q9TY27 EMBL-EBI
O01556 EMBL-EBI
WormBase CE10618 Wormbase
CE10628 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52362 Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] 0.0
blast AAB52356 Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] 0.0
blast AAB52361 Hypothetical protein F47B3.6 [Caenorhabditis elegans] ref|NP_491275.2| F47B3.6 [Caenorhabditis elegans] 1.0E-175
blast AAB52362 Hypothetical protein F47B3.7 [Caenorhabditis elegans] ref|NP_491276.1| F47B3.7 [Caenorhabditis elegans] 1.0E-107
blast AAB52356 Hypothetical protein F47B3.1 [Caenorhabditis elegans] ref|NP_491278.1| F47B3.1 [Caenorhabditis elegans] 3.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.3E-102
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 6.2E-92
Pfam IPR004296 EMBL-EBI Protein of unknown function DUF236 3.6E-14
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.8E-48
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 3.5E-31
Sequence
Target Sequence 
>C. ELEGANS:174540_S_AT
gaggaaatccgcaatcagcgtcactatgccattcagacggaggcgcaatacatgtacatt
caccgtgttctcctcgaatacttcttggaattgcacaaagagacgtacgaaggattgttg
ctgacaaagaattacgaggaaaagtatgcaaagtggctggacgattataacacctacgca
gaagccaacgatcgtactcaagcagctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAATCCGCAATCAGCGTCACT 371 405 86 Antisense
ATCAGCGTCACTATGCCATTCAGAC 638 27 99 Antisense
TATGCCATTCAGACGGAGGCGCAAT 609 657 110 Antisense
GACGGAGGCGCAATACATGTACATT 211 377 121 Antisense
ACATGTACATTCACCGTGTTCTCCT 527 105 135 Antisense
GTGTTCTCCTCGAATACTTCTTGGA 623 485 150 Antisense
ACGTACGAAGGATTGTTGCTGACAA 160 93 188 Antisense
AAGTATGCAAAGTGGCTGGACGATT 659 155 227 Antisense
GGCTGGACGATTATAACACCTACGC 23 535 240 Antisense
ACACCTACGCAGAAGCCAACGATCG 5 111 255 Antisense
CCAACGATCGTACTCAAGCAGCTAA 464 273 270 Antisense
Sequence Source Affymetrix Proprietary Database