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[174537_at]

Description C32002_rc /REP_DB=TREMBL Accession /GB=C32002 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk313g11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 72      6grp_total > 70      4grp_total > 07      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 392.2
(3)
P 		294.9
(-3)
P 		360.1
(1)
P 		307.1
(-2.2)
P 		97
B 390.3
(2.5)
P 		299.6
(-3)
P 		329.2
(-1.2)
P 		398.8
(3)
P 		99
C 364.5
(1.6)
P 		304.7
(-3)
P 		382.2
(3)
P 		380.6
(2.9)
P 		78
avr 382.3
(3) 		299.7
(-3) 		357.2
(1.2) 		362.2
(1.5) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 339
(-3)
P 		392.8
(-0.5)
P 		379.3
(-1.1)
P 		390.2
(-0.6)
P 		465.9
(3)
P 		378.1
(-1.2)
P 		127
B 353.4
(-1.8)
P 		371.4
(-1.4)
P 		489.8
(1.4)
P 		558.3
(3)
P 		302.1
(-3)
P 		387.7
(-1)
P 		256
C 402.4
(-0.8)
P 		374.5
(-2.3)
P 		390.9
(-1.4)
P 		468.8
(3)
P 		363
(-3)
P 		406.5
(-0.5)
P 		106
avr 364.9
(-3) 		379.6
(-2.2) 		420
(0.1) 		472.4
(3) 		377
(-2.3) 		390.8
(-1.6) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 142.8
(3)
P 		64
(-1.8)
P 		94.1
(0)
P 		45
(-3)
P 		98
B 124.4
(3)
P 		74
(-3)
P 		76.3
(-2.7)
P 		85
(-1.7)
P 		50
C 120.6
(1.9)
P 		87.6
(-1)
P 		133.2
(3)
P 		64.2
(-3)
P 		69
avr 129.3
(3) 		75.2
(-2) 		101.2
(0.4) 		64.7
(-3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 62.5
(-3)
P 		139.7
(2.9)
P 		82.6
(-1.5)
P 		99
(-0.2)
P 		140.6
(3)
P 		92.1
(-0.7)
P 		78
B 123
(-2.2)
P 		123.6
(-2)
P 		118.9
(-3)
P 		147.9
(3)
P 		122.8
(-2.2)
P 		144.6
(2.3)
P 		29
C 149.2
(3)
P 		114.3
(-0.8)
P 		99.5
(-2.4)
P 		94.3
(-3)
P 		117.5
(-0.5)
P 		136.1
(1.6)
P 		55
avr 111.6
(-0.5) 		125.9
(2.8) 		100.3
(-3) 		113.7
(0) 		127
(3) 		124.3
(2.4) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22420
Sequence Type Exemplar sequence
Representative Public ID C32002 NCBI
Target Description C32002_rc /REP_DB=TREMBL Accession /GB=C32002 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk313g11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076131(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076131 NCBI Caenorhabditis elegans K10B3.5 (K10B3.5) mRNA, complete cds. 11/11 None
K10B3.5 ENSEMBL cdna:known chromosome:CEL140:X:3103241:3106270:-1 gene:K10B3.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3103298-3103578(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10B3.5
Entrez Gene 180599 Entrez gene
SwissProt Q21406 EMBL-EBI
WormBase CE07368 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB53872 Hypothetical protein K10B3.5 [Caenorhabditis elegans] ref|NP_508532.1| K10B3.5 [Caenorhabditis elegans] 0.0
blast CAE68378 Hypothetical protein CBG14134 [Caenorhabditis briggsae] 7.0E-23
Sequence
Target Sequence 
>C. ELEGANS:174537_AT
aatgcattttttttcgatagcccaattaatttgtccagagtaaagattaaatttctaact
ccctgtcacttttagatttgtatcatttttagtacgcccaattgttttcaacatctagtc
atttttgtcatgttttaatattatcgactggtttcttattctcaataccattttcattga
tcattccgtaaatcacgttgtcttcttgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCATTTTTTTTCGATAGCCCAA 553 165 44 Antisense
GATAGCCCAATTAATTTGTCCAGAG 395 425 59 Antisense
GATTAAATTTCTAACTCCCTGTCAC 10 431 88 Antisense
AACTCCCTGTCACTTTTAGATTTGT 3 143 100 Antisense
GTATCATTTTTAGTACGCCCAATTG 202 455 123 Antisense
AGTACGCCCAATTGTTTTCAACATC 46 61 134 Antisense
TCAACATCTAGTCATTTTTGTCATG 58 631 151 Antisense
ATTATCGACTGGTTTCTTATTCTCA 435 13 183 Antisense
GTTTCTTATTCTCAATACCATTTTC 302 449 194 Antisense
ACCATTTTCATTGATCATTCCGTAA 245 87 210 Antisense
CCGTAAATCACGTTGTCTTCTTGTA 372 263 229 Antisense
Sequence Source Affymetrix Proprietary Database