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[174536_s_at]

Description C58213_rc /REP_DB=TREMBL Accession /GB=C58213 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk363b11 : 3prime end, single read.
Cluster 6grp_total > 65      4grp_total > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 1
(-3)
A 		5.7
(-1.5)
A 		8
(-0.7)
A 		19.3
(3)
A 		18
B 15
(3)
A 		7.4
(-0.4)
A 		4.5
(-1.7)
A 		1.7
(-3)
A 		13
C 2.7
(-2.9)
A 		2.4
(-3)
A 		2.2
(-3)
A 		51.4
(3)
A 		49
avr 6.2
(-2.6) 		5.2
(-2.9) 		4.9
(-3) 		24.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 4.7
(-3)
A 		11.2
(-2.3)
A 		63.7
(3)
M 		30.8
(-0.3)
A 		28.3
(-0.6)
A 		50.4
(1.6)
A 		59
B 4.7
(-2.7)
A 		20.5
(0.7)
A 		6.5
(-2.3)
A 		3.2
(-3)
A 		19.4
(0.5)
A 		31.3
(3)
A 		28
C 1
(-3)
A 		17.3
(0.4)
A 		23.7
(1.8)
A 		19.1
(0.8)
A 		2.7
(-2.6)
A 		29.6
(3)
A 		29
avr 3.5
(-3) 		16.3
(-0.7) 		31.3
(2) 		17.7
(-0.5) 		16.8
(-0.6) 		37.1
(3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.4
(-3)
A 		1.2
(-1)
A 		2.1
(1.3)
A 		2.8
(3)
A 		2
B 4.8
(3)
A 		1.8
(-1.1)
A 		1
(-2.2)
A 		0.4
(-3)
A 		4
C 0.9
(-2.9)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		8.7
(3)
A 		8
avr 2
(-1.3) 		1.2
(-3) 		1.3
(-2.8) 		4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 0.9
(-3)
A 		4
(-1.6)
A 		13.9
(3)
M 		7.8
(0.2)
A 		8.5
(0.5)
A 		12.3
(2.3)
A 		13
B 1.6
(-2.6)
A 		6.8
(0.3)
A 		1.6
(-2.6)
A 		0.9
(-3)
A 		7.9
(0.9)
A 		11.7
(3)
A 		11
C 0.4
(-3)
A 		5.3
(0.1)
A 		6
(0.5)
A 		3.8
(-0.9)
A 		0.9
(-2.7)
A 		9.9
(3)
A 		10
avr 1
(-3) 		5.4
(-0.4) 		7.2
(0.6) 		4.2
(-1.1) 		5.8
(-0.2) 		11.3
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174536_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20671
Sequence Type Exemplar sequence
Representative Public ID C58213 NCBI
Target Description C58213_rc /REP_DB=TREMBL Accession /GB=C58213 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk363b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062412 NCBI Caenorhabditis elegans F35D11.7 (F35D11.7) mRNA, complete cds. 11/11 A 
SNAP00000013541 ENSEMBL cdna:SNAP chromosome:CEL140:II:4615664:4616520:-1 11/11 None
GENEFINDER00000013548 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4615664:4616520:-1 11/11 None
F35D11.7 ENSEMBL cdna:known chromosome:CEL140:II:4615622:4616520:-1 gene:F35D11.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4615630-4615969(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.7
Entrez Gene 173799 Entrez gene
SwissProt Q20036 EMBL-EBI
WormBase CE32649 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68753 Hypothetical protein F35D11.7 [Caenorhabditis elegans] ref|NP_494813.2| F35D11.7 [Caenorhabditis elegans] 1.0E-126
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 7.0E-45
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 2.0E-40
Sequence
Target Sequence 
>C. ELEGANS:174536_S_AT
ggttcatcaagctgacaatggtccaatattccgattcgccgctgattgcattgttctaaa
atctggaattgtcaaggctaatggcacagaaacaagaaagaattggggaagtttggagtt
ttgtgtgggaaaaaatgcagtgcaggcttatacagacgatgaaaaaccatatggaaacga
cgtggaagcagttttgtgtggaagacatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCATCAAGCTGACAATGGTCCA 308 507 47 Antisense
CAATGGTCCAATATTCCGATTCGCC 194 181 62 Antisense
ATTCGCCGCTGATTGCATTGTTCTA 433 9 80 Antisense
GCCGCTGATTGCATTGTTCTAAAAT 698 285 84 Antisense
GGAATTGTCAAGGCTAATGGCACAG 119 535 111 Antisense
GTCAAGGCTAATGGCACAGAAACAA 189 463 117 Antisense
TGGGGAAGTTTGGAGTTTTGTGTGG 119 553 150 Antisense
GTGTGGGAAAAAATGCAGTGCAGGC 164 489 169 Antisense
GCAGTGCAGGCTTATACAGACGATG 180 311 183 Antisense
ACGACGTGGAAGCAGTTTTGTGTGG 474 91 223 Antisense
AGCAGTTTTGTGTGGAAGACATCCA 302 77 233 Antisense
Sequence Source Affymetrix Proprietary Database