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[174535_s_at]

Description C39195_rc /REP_DB=TREMBL Accession /GB=C39195 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk524g12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 29      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 99      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 236.2
(-0.4)
P 		206.8
(-2.7)
P 		202.3
(-3)
P 		281.1
(3)
P 		79
B 275.9
(2.4)
P 		170.8
(-3)
P 		288.2
(3)
P 		262.3
(1.7)
P 		117
C 200.4
(-1.9)
P 		213.2
(-1.3)
P 		175.6
(-3)
P 		310.5
(3)
P 		135
avr 237.5
(-0.2) 		196.9
(-3) 		222
(-1.3) 		284.6
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 173
(-0.7)
P 		154
(-2)
P 		179.9
(-0.2)
P 		226.4
(3)
P 		139
(-3)
P 		223.1
(2.8)
P 		87
B 262.4
(3)
P 		177.2
(-3)
P 		238.9
(1.3)
P 		181.4
(-2.7)
P 		246.4
(1.9)
P 		246.1
(1.9)
P 		85
C 249.8
(1.5)
P 		198.7
(0.2)
P 		244.6
(1.4)
P 		74
(-3)
P 		307
(3)
P 		220.6
(0.8)
P 		233
avr 228.4
(2.8) 		176.6
(-1.6) 		221.1
(2.2) 		160.6
(-3) 		230.8
(3) 		229.9
(2.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 86
(3)
P 		44.9
(-2.5)
P 		52.9
(-1.4)
P 		41.2
(-3)
P 		45
B 88
(3)
P 		42.2
(-3)
P 		66.8
(0.2)
P 		55.9
(-1.2)
P 		46
C 66.3
(3)
P 		61.3
(0.8)
P 		61.2
(0.8)
P 		52.4
(-3)
P 		14
avr 80.1
(3) 		49.5
(-3) 		60.3
(-0.9) 		49.8
(-2.9) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 31.9
(-3)
P 		54.8
(2.4)
P 		39.2
(-1.3)
P 		57.4
(3)
P 		41.9
(-0.6)
P 		54.3
(2.3)
P 		26
B 91.3
(2)
P 		59
(-1.7)
P 		58
(-1.8)
P 		48
(-3)
P 		100.1
(3)
P 		91.8
(2)
P 		52
C 92.6
(2.5)
P 		60.6
(0.2)
P 		62.3
(0.4)
P 		14.9
(-3)
P 		99.3
(3)
P 		73.9
(1.2)
P 		84
avr 71.9
(1.7) 		58.1
(-0.3) 		53.2
(-1) 		40.1
(-3) 		80.4
(3) 		73.3
(1.9) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174535_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20521
Sequence Type Exemplar sequence
Representative Public ID C39195 NCBI
Target Description C39195_rc /REP_DB=TREMBL Accession /GB=C39195 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk524g12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064316(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064316 NCBI Caenorhabditis elegans Y46G5A.12 (Y46G5A.12) mRNA, complete cds. 11/11 A 
SNAP00000038992 ENSEMBL cdna:SNAP chromosome:CEL140:II:12767219:12768114:-1 11/11 None
GENEFINDER00000039020 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12767219:12768114:-1 11/11 None
Y46G5A.12.2 ENSEMBL cdna:known chromosome:CEL140:II:12767116:12768119:-1 gene:Y46G5A.12 11/11 None
Y46G5A.12.1 ENSEMBL cdna:known chromosome:CEL140:II:12767116:12768114:-1 gene:Y46G5A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12767189-12767602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.12
Entrez Gene 174908 Entrez gene
SwissProt Q9U2F6 EMBL-EBI
WormBase CE21987 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14490_AT SNF7 family protein at
ATH1-121501:265375_AT SNF7 family protein at
CANINE:1587799_S_AT similar to putative breast adenocarcinoma marker cfa
CANINE:1591540_AT similar to putative breast adenocarcinoma marker cfa
CANINE_2:CFA.712.1.S1_AT similar to putative breast adenocarcinoma marker cfa
CANINE_2:CFA.712.1.S1_S_AT similar to putative breast adenocarcinoma marker cfa
DROSOPHILA_2:1623625_AT dm
DROSGENOME1:152659_AT dm
HG-U133A:202121_S_AT chromatin modifying protein 2A hs
HG-U133_PLUS_2:202121_S_AT chromatin modifying protein 2A hs
HG-U133A_2:202121_S_AT chromatin modifying protein 2A hs
HG-FOCUS:202121_S_AT chromatin modifying protein 2A hs
HU35KSUBA:RC_AA456588_AT chromatin modifying protein 2A hs
U133_X3P:G7656921_3P_A_AT chromatin modifying protein 2A hs
HG-U95AV2:39363_AT chromatin modifying protein 2A hs
MOUSE430A_2:1425591_A_AT chromatin modifying protein 2A mm
MOE430A:1425591_A_AT chromatin modifying protein 2A mm
MOUSE430_2:1425591_A_AT chromatin modifying protein 2A mm
MU11KSUBA:AA117532_AT chromatin modifying protein 2A mm
MG-U74AV2:97841_AT chromatin modifying protein 2A mm
MU19KSUBA:TC23855_AT Chromatin modifying protein 2A (Chmp2a), mRNA mm
RG-U34A:RC_AA892768_AT similar to RIKEN cDNA 1500016L11 (predicted) rn
RAE230A:1373042_AT similar to RIKEN cDNA 1500016L11 (predicted) rn
RAT230_2:1373042_AT similar to RIKEN cDNA 1500016L11 (predicted) rn
RG-U34C:RC_AI136295_AT Similar to RIKEN cDNA 1500016L11 (predicted) rn
YEAST_2:1770828_AT Class E Vps protein of the ESCRT-III complex, required for sorting of integral membrane proteins into lumenal vesicles of multivesicular bodies, and for delivery of newly synthesized vacuolar enzymes to the vacuole, involved in endocytosis Sc
Protein Similarities
Method ID Description E-Value
blast CAB60355 Hypothetical protein Y46G5A.12 [Caenorhabditis elegans] ref|NP_496717.1| Y46G5A.12 [Caenorhabditis elegans] 5.0E-90
blast CAE63446 Hypothetical protein CBG07905 [Caenorhabditis briggsae] 5.0E-89
Protein Domains
Database ID Description E-Value
Pfam IPR005024 EMBL-EBI Snf7 1.6E-61
Sequence
Target Sequence 
>C. ELEGANS:174535_S_AT
aaggaggaggtgatgggcgacgcgatcgatgatgctcttggagacgccggcgatgaggag
gagaccgatcagatcgttaatcagttaggcatacaaatgggcgaagaaatggccgggctc
ccgtcggcggccggtggactcaatgctggtggagaacggatcggcggtcgccaagctgtt
gcagctggaggtagcggtggagctcatcatggagccggtggagccggtggtggaaatgat
gttgacgatgatcttcaggcccgtcttgatcagcttagaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAGGAGGTGATGGGCGACGCGA 576 159 32 Antisense
CGACGCGATCGATGATGCTCTTGGA 576 251 49 Antisense
GAGACGCCGGCGATGAGGAGGAGAC 446 393 72 Antisense
GAGGAGGAGACCGATCAGATCGTTA 29 405 86 Antisense
TGGGCGAAGAAATGGCCGGGCTCCC 215 499 129 Antisense
GCCGGTGGACTCAATGCTGGTGGAG 674 283 161 Antisense
GCTGGTGGAGAACGGATCGGCGGTC 305 293 176 Antisense
CGGTCGCCAAGCTGTTGCAGCTGGA 443 243 196 Antisense
GTTGCAGCTGGAGGTAGCGGTGGAG 152 439 209 Antisense
GAGCTCATCATGGAGCCGGTGGAGC 11 389 231 Antisense
GGCCCGTCTTGATCAGCTTAGAAGA 373 543 289 Antisense
Sequence Source Affymetrix Proprietary Database