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[174534_at]

Description C58682_rc /REP_DB=TREMBL Accession /GB=C58682 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370c11 : 3prime end, single read.
Cluster 6grp_total > 91      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 384
1 2 3 4 range
A 4.1
(-3)
A 		15.7
(-2.7)
A 		21.7
(-2.6)
A 		280.4
(3)
P 		276
B 6.4
(-2.9)
A 		5
(-3)
A 		3.4
(-3)
A 		294
(3)
P 		291
C 17.7
(-2.8)
A 		6.9
(-3)
A 		4.5
(-3)
A 		387.7
(3)
P 		383
avr 9.4
(-3) 		9.2
(-3) 		9.9
(-3) 		320.7
(3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10.6
(-2)
A 		3.4
(-3)
A 		6.9
(-2.5)
A 		33.5
(1.1)
A 		47.8
(3)
A 		16.6
(-1.2)
A 		44
B 14.6
(-1.3)
A 		15.5
(-1.2)
A 		4.4
(-3)
A 		41
(3)
A 		4.5
(-3)
A 		8.1
(-2.4)
A 		37
C 2
(-3)
A 		24.5
(3)
A 		5.6
(-2)
A 		5.6
(-2)
A 		8.4
(-1.3)
A 		3.5
(-2.6)
A 		23
avr 9.1
(-2) 		14.5
(-0.5) 		5.6
(-3) 		26.7
(3) 		20.2
(1.2) 		9.4
(-1.9) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 1.5
(-3)
A 		3.4
(-2.7)
A 		5.7
(-2.4)
A 		41.1
(3)
P 		40
B 2
(-2.9)
A 		1.2
(-3)
A 		0.8
(-3)
A 		62.6
(3)
P 		62
C 5.9
(-2.6)
A 		2
(-3)
A 		1.6
(-3)
A 		65.4
(3)
P 		64
avr 3.1
(-2.9) 		2.2
(-3) 		2.7
(-2.9) 		56.4
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.6)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		8.5
(0.3)
A 		14.4
(3)
A 		4
(-1.7)
A 		13
B 5.1
(-0.6)
A 		5.2
(-0.5)
A 		1.1
(-3)
A 		10.9
(3)
A 		1.8
(-2.6)
A 		3
(-1.8)
A 		10
C 0.8
(-3)
A 		7.5
(3)
A 		1.4
(-2.5)
A 		1.1
(-2.7)
A 		2.7
(-1.3)
A 		1.2
(-2.6)
A 		7
avr 2.6
(-1.6) 		4.6
(0.6) 		1.3
(-3) 		6.8
(3) 		6.3
(2.5) 		2.7
(-1.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22444
Sequence Type Exemplar sequence
Representative Public ID C58682 NCBI
Target Description C58682_rc /REP_DB=TREMBL Accession /GB=C58682 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C58682
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C58682 C58682_rc /REP_DB=TREMBL Accession /GB=C58682 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk370c11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1505408-1505687(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174534_AT
gcatcctcaaattgcttgttatagcacccgggacttcgcgggactccgcaaattagaaaa
agggcccgtgaagggtcgggcgcgttgtgttttgcaaaagatcgtgttacgcaccgaatt
ttgatgtcaccgatgcaccatgatcaactcaacttcgagagctcagatcggacggaaggt
ttttttttaattttgcaacctgccacaatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCTCAAATTGCTTGTTATAGC 122 311 48 Antisense
TTATAGCACCCGGGACTTCGCGGGA 372 547 66 Antisense
GGACTTCGCGGGACTCCGCAAATTA 297 515 78 Antisense
GGCCCGTGAAGGGTCGGGCGCGTTG 93 511 110 Antisense
TCGGGCGCGTTGTGTTTTGCAAAAG 22 587 123 Antisense
GCAAAAGATCGTGTTACGCACCGAA 266 317 141 Antisense
ACGCACCGAATTTTGATGTCACCGA 31 93 156 Antisense
CACCGATGCACCATGATCAACTCAA 353 201 175 Antisense
GATCAACTCAACTTCGAGAGCTCAG 411 421 189 Antisense
GAGAGCTCAGATCGGACGGAAGGTT 111 395 204 Antisense
AATTTTGCAACCTGCCACAATTTCA 183 175 236 Antisense
Sequence Source Affymetrix Proprietary Database