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[174533_at]

Description C51555_rc /REP_DB=TREMBL Accession /GB=C51555 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209b11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 76      6grp_total > 65      4grp_total > 28      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 51.4
(1.2)
P 		57.3
(2.6)
A 		33.1
(-3)
A 		59.1
(3)
P 		26
B 50.3
(0.4)
P 		78.1
(3)
A 		13.9
(-3)
A 		37.5
(-0.8)
A 		64
C 36.4
(-1.2)
P 		20.8
(-3)
A 		32
(-1.7)
A 		71.7
(3)
M 		51
avr 46
(1) 		52.1
(2.2) 		26.3
(-3) 		56.1
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 62.3
(-0.6)
A 		29
(-3)
A 		113
(3)
P 		52.6
(-1.3)
A 		99.7
(2.1)
P 		40.9
(-2.2)
A 		84
B 77.3
(-3)
P 		136.2
(1.4)
P 		111.6
(-0.4)
P 		97.7
(-1.5)
P 		105.8
(-0.9)
P 		157.6
(3)
P 		80
C 22.6
(-3)
A 		127.6
(2.2)
P 		42.8
(-2)
A 		94.6
(0.6)
P 		23.2
(-3)
A 		143.5
(3)
P 		121
avr 54.1
(-3) 		97.6
(1.4) 		89.1
(0.5) 		81.6
(-0.2) 		76.2
(-0.8) 		114
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.7
(3)
P 		12.4
(-0.7)
A 		8.6
(-3)
A 		8.7
(-2.9)
P 		10
B 16
(1.8)
P 		19.3
(3)
A 		3.2
(-3)
A 		8
(-1.2)
A 		16
C 12
(2.9)
P 		6
(-3)
A 		11.1
(2)
A 		12.1
(3)
M 		6
avr 15.6
(3) 		12.6
(0.8) 		7.6
(-3) 		9.6
(-1.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 11.5
(-2.6)
A 		10.3
(-2.9)
A 		24.6
(1.4)
P 		13.3
(-2)
A 		30.1
(3)
P 		10
(-3)
A 		20
B 26.9
(-2.8)
P 		45.3
(0.5)
P 		27.1
(-2.8)
P 		25.9
(-3)
P 		43
(0.1)
P 		58.8
(3)
P 		33
C 8.4
(-2.9)
A 		38.9
(1.7)
P 		10.9
(-2.5)
A 		19
(-1.3)
P 		7.5
(-3)
A 		48
(3)
P 		41
avr 15.6
(-3) 		31.5
(1.1) 		20.9
(-1.6) 		19.4
(-2) 		26.9
(-0.1) 		38.9
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21889
Sequence Type Exemplar sequence
Representative Public ID C51555 NCBI
Target Description C51555_rc /REP_DB=TREMBL Accession /GB=C51555 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C51555
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C51555 C51555_rc /REP_DB=TREMBL Accession /GB=C51555 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk209b11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073875 11/11 Negative Strand Matching Probes A 
T09E8.1a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13164222-13164500(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174533_AT
tacttctatgcattgaaatatctgaagtagaagacgacgaatttgaagtcaataccttct
ttggcgctatgattacagtaatattaggcatgaatccagtacaatatgctcgtaatgtag
ataatactttacatccggcacagactagacacattttcgttcgataaatagcatctacag
cagttcgaatataccaaaatttagaaattaaaaaaataaacgataagtcgaagtggtaat
cgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTTCTATGCATTGAAATATCTGA 314 637 15 Antisense
GAAGTCAATACCTTCTTTGGCGCTA 4 337 59 Antisense
ACCTTCTTTGGCGCTATGATTACAG 560 85 68 Antisense
ATATTAGGCATGAATCCAGTACAAT 678 17 95 Antisense
GAATCCAGTACAATATGCTCGTAAT 182 329 106 Antisense
TAATACTTTACATCCGGCACAGACT 395 635 136 Antisense
CCGGCACAGACTAGACACATTTTCG 227 263 149 Antisense
GACACATTTTCGTTCGATAAATAGC 300 367 162 Antisense
AAATAGCATCTACAGCAGTTCGAAT 413 115 180 Antisense
TCTACAGCAGTTCGAATATACCAAA 670 613 188 Antisense
GATAAGTCGAAGTGGTAATCGCACT 708 421 236 Antisense
Sequence Source Affymetrix Proprietary Database