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[174532_s_at]

Description C33201_rc /REP_DB=TREMBL Accession /GB=C33201 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk342d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 44      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 392.3
(0.3)
P 		419.7
(3)
P 		359.6
(-3)
P 		413.4
(2.4)
P 		60
B 360.6
(-1.8)
P 		408.6
(3)
P 		348.2
(-3)
P 		408.1
(3)
P 		60
C 435.1
(3)
P 		364.3
(-0.3)
P 		433.9
(2.9)
P 		308.2
(-3)
P 		127
avr 396
(2.6) 		397.5
(3) 		380.6
(-1.9) 		376.6
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1036
1 2 3 4 5 6 range
A 429.4
(-3)
P 		530.8
(-1.7)
P 		622.2
(-0.6)
P 		554.2
(-1.5)
P 		643
(-0.4)
P 		914.6
(3)
P 		485
B 464.4
(-3)
P 		535.9
(-2.5)
P 		588.2
(-2.1)
P 		513
(-2.6)
P 		763.9
(-0.8)
P 		1286.8
(3)
P 		822
C 491.4
(-3)
P 		607
(-2.3)
P 		524.4
(-2.8)
P 		665.8
(-1.9)
P 		597.1
(-2.3)
P 		1464.9
(3)
P 		974
avr 461.7
(-3) 		557.9
(-2.2) 		578.3
(-2.1) 		577.7
(-2.1) 		668
(-1.4) 		1222.1
(3) 		760
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 142.8
(3)
P 		91.1
(-0.8)
P 		94
(-0.6)
P 		60.5
(-3)
P 		82
B 115
(3)
P 		100.9
(0.5)
P 		80.7
(-3)
P 		87
(-1.9)
P 		34
C 144
(2.6)
P 		104.7
(0.2)
P 		151.2
(3)
P 		52
(-3)
P 		99
avr 133.9
(3) 		98.9
(-0.1) 		108.6
(0.7) 		66.5
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 79.1
(-3)
P 		188.8
(1.6)
P 		135.5
(-0.6)
P 		140.6
(-0.4)
P 		194
(1.8)
P 		222.7
(3)
P 		144
B 161.6
(-2.6)
P 		178.4
(-2.3)
P 		142.8
(-2.9)
P 		135.9
(-3)
P 		310.3
(0)
P 		479.8
(3)
P 		344
C 182.1
(-2.2)
P 		185.2
(-2.1)
P 		133.5
(-3)
P 		133.9
(-3)
P 		193.2
(-2)
P 		490.4
(3)
P 		357
avr 140.9
(-2.9) 		184.1
(-1.9) 		137.3
(-3) 		136.8
(-3) 		232.5
(-0.8) 		397.6
(3) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174532_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20826
Sequence Type Exemplar sequence
Representative Public ID C33201 NCBI
Target Description C33201_rc /REP_DB=TREMBL Accession /GB=C33201 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk342d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026719(11), NM_063015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026719 NCBI Caenorhabditis elegans B0252.4b (Cyclophilin) mRNA, complete cds. 11/11 None
NM_063015 NCBI Caenorhabditis elegans B0252.4a (Cyclophilin) mRNA, complete cds. 11/11 A 
SNAP00000013955 ENSEMBL cdna:SNAP chromosome:CEL140:II:6912603:6913291:-1 11/11 None
GENEFINDER00000013962 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6912603:6913291:-1 11/11 None
B0252.4b ENSEMBL cdna:known chromosome:CEL140:II:6912570:6913291:-1 gene:B0252.4 11/11 A 
B0252.4a ENSEMBL cdna:known chromosome:CEL140:II:6912694:6913291:-1 gene:B0252.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6912575-6913001(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0252.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68671 Cyclophylin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001021890.1| B0252.4b [Caenorhabditis elegans] sp|P52017|CYP10_CAEEL Peptidyl-prolyl cis-trans isomerase 10 (PPIase) (Rotamase) (Cyclophilin-10) 1.0E-91
blast AAC46758 Cyclophylin protein 10, isoform a [Caenorhabditis elegans] ref|NP_495416.2| B0252.4a [Caenorhabditis elegans] gb|AAC47114.1| cyclophilin isoform 1.0E-83
blast AAK68671 Cyclophylin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001021890.1| B0252.4b [Caenorhabditis elegans] sp|P52017|CYP10_CAEEL Peptidyl-prolyl cis-trans isomerase 10 (PPIase) (Rotamase) (Cyclophilin-10) 1.0E-83
blast AAC46758 Cyclophylin protein 10, isoform a [Caenorhabditis elegans] ref|NP_495416.2| B0252.4a [Caenorhabditis elegans] gb|AAC47114.1| cyclophilin isoform 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 1.1E-51
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 4.4E-51
Sequence
Target Sequence 
>C. ELEGANS:174532_S_AT
gtgctctgaagcatgactcacgaggatgcgtatcaatggcaaacaatggacctgactcca
atcgatcgcaattcttcatcacttacgcgaagcaagctcatctcgacatgaagtacacac
ttttcggaaaagtgattgacggattcgacaccctagaagaaatagaaacgatcaaagttg
acaataaatacagacctctcgttcagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCTGAAGCATGACTCACGAGG 706 479 13 Antisense
GACTCACGAGGATGCGTATCAATGG 625 373 27 Antisense
AATGGCAAACAATGGACCTGACTCC 242 161 47 Antisense
CAATGGACCTGACTCCAATCGATCG 60 183 56 Antisense
ACTCCAATCGATCGCAATTCTTCAT 367 99 67 Antisense
CGCAATTCTTCATCACTTACGCGAA 667 253 79 Antisense
TACGCGAAGCAAGCTCATCTCGACA 376 649 96 Antisense
GCAAGCTCATCTCGACATGAAGTAC 189 321 104 Antisense
GACATGAAGTACACACTTTTCGGAA 410 367 117 Antisense
AAGTGATTGACGGATTCGACACCCT 161 159 142 Antisense
TAAATACAGACCTCTCGTTCAGCAA 620 641 197 Antisense
Sequence Source Affymetrix Proprietary Database