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[174531_at]

Description CEC2681_rc /REP_DB=TREMBL Accession /GB=C08268 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk185c2 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 36      6grp_total > 35      4grp_total > 06      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 403
1 2 3 4 range
A 236.2
(0.7)
P 		36.4
(-3)
A 		95
(-1.9)
A 		362.7
(3)
A 		326
B 211.6
(0.5)
P 		86.8
(-3)
A 		86
(-3)
A 		301.6
(3)
P 		216
C 299
(0.4)
P 		115.7
(-3)
A 		154.3
(-2.3)
A 		438.9
(3)
P 		323
avr 248.9
(0.5) 		79.6
(-3) 		111.8
(-2.3) 		367.7
(3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 165.9
(-0.4)
P 		164.3
(-0.4)
P 		248.1
(3)
P 		101.4
(-3)
M 		117.3
(-2.3)
A 		177.3
(0.1)
A 		147
B 241.2
(1.7)
P 		271.4
(3)
A 		132.5
(-3)
P 		142.9
(-2.6)
P 		174.1
(-1.2)
P 		196.4
(-0.2)
A 		139
C 239.4
(1.6)
P 		268.7
(3)
P 		168.3
(-1.6)
P 		138.9
(-3)
P 		142
(-2.9)
A 		196.3
(-0.3)
P 		130
avr 215.5
(1.9) 		234.8
(3) 		183
(0.1) 		127.7
(-3) 		144.5
(-2.1) 		190
(0.5) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 86
(3)
P 		7.9
(-3)
A 		24.8
(-1.7)
A 		53.1
(0.5)
A 		78
B 67.5
(3)
P 		21.4
(-2.8)
A 		19.9
(-3)
A 		64.3
(2.6)
P 		48
C 99
(3)
P 		33.3
(-3)
A 		53.8
(-1.1)
A 		74
(0.7)
P 		66
avr 84.2
(3) 		20.9
(-3) 		32.8
(-1.9) 		63.8
(1.1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 30.6
(-2.1)
P 		58.4
(3)
P 		54
(2.2)
P 		25.7
(-3)
M 		35.4
(-1.2)
A 		43.2
(0.2)
A 		33
B 83.9
(2.3)
P 		90.3
(3)
A 		32.2
(-3)
P 		37.8
(-2.4)
P 		70.7
(1)
P 		73.2
(1.2)
A 		58
C 88.7
(3)
P 		82
(2.3)
P 		42.8
(-1.5)
P 		27.9
(-3)
P 		45.9
(-1.2)
A 		65.7
(0.7)
P 		61
avr 67.7
(1.8) 		76.9
(3) 		43
(-1.4) 		30.5
(-3) 		50.7
(-0.4) 		60.7
(0.9) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20667
Sequence Type Exemplar sequence
Representative Public ID CEC2681 NCBI
Target Description CEC2681_rc /REP_DB=TREMBL Accession /GB=C08268 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk185c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062706 NCBI Caenorhabditis elegans C25H3.12 (C25H3.12) mRNA, complete cds. 11/11 None
SNAP00000016800 ENSEMBL cdna:SNAP chromosome:CEL140:II:5659906:5660648:-1 11/11 None
GENEFINDER00000016824 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5659906:5660755:-1 11/11 None
C25H3.12 ENSEMBL cdna:known chromosome:CEL140:II:5659906:5660755:-1 gene:C25H3.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5659925-5660256(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C25H3.12
Entrez Gene 173959 Entrez gene
SwissProt Q9BIA4 EMBL-EBI
WormBase CE27092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31459 Hypothetical protein C25H3.12 [Caenorhabditis elegans] ref|NP_495107.1| C25H3.12 [Caenorhabditis elegans] 1.0E-110
blast AAK31459 Hypothetical protein C25H3.12 [Caenorhabditis elegans] ref|NP_495107.1| C25H3.12 [Caenorhabditis elegans] 1.0E-107
blast AAK31459 Hypothetical protein C25H3.12 [Caenorhabditis elegans] ref|NP_495107.1| C25H3.12 [Caenorhabditis elegans] 2.0E-90
blast CAE59163 Hypothetical protein CBG02469 [Caenorhabditis briggsae] emb|CAE59161.1| Hypothetical protein CBG02467 [Caenorhabditis briggsae] 2.0E-59
blast CAE59163 Hypothetical protein CBG02469 [Caenorhabditis briggsae] emb|CAE59161.1| Hypothetical protein CBG02467 [Caenorhabditis briggsae] 3.0E-59
blast CAE59163 Hypothetical protein CBG02469 [Caenorhabditis briggsae] emb|CAE59161.1| Hypothetical protein CBG02467 [Caenorhabditis briggsae] 9.0E-55
Sequence
Target Sequence 
>C. ELEGANS:174531_AT
gttatcgagaccgcaatccggaaactggaagcaagttgacattaaacgaaggtgcgggcg
tttttggaaatgccatgcatccactcacacgatatttcaaagtcggagatgttgacgttt
ccattctcgggcgatcgtttccaactgaaaagacggtggacgaagagggtccatggactg
ctcaaagcctcttcaattctctcgagtctcgcattaaaaaggaaaggatagatgcgaaag
atcaaccgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCGAGACCGCAATCCGGAAAC 96 443 13 Antisense
TTGACATTAAACGAAGGTGCGGGCG 209 683 48 Antisense
GGTGCGGGCGTTTTTGGAAATGCCA 297 497 63 Antisense
TGGAAATGCCATGCATCCACTCACA 19 549 77 Antisense
GCATCCACTCACACGATATTTCAAA 28 309 89 Antisense
GAGATGTTGACGTTTCCATTCTCGG 219 397 118 Antisense
GAAGAGGGTCCATGGACTGCTCAAA 140 339 174 Antisense
GACTGCTCAAAGCCTCTTCAATTCT 581 375 188 Antisense
TCAAAGCCTCTTCAATTCTCTCGAG 369 629 194 Antisense
TCAATTCTCTCGAGTCTCGCATTAA 658 633 205 Antisense
GGATAGATGCGAAAGATCAACCGTC 682 509 238 Antisense
Sequence Source Affymetrix Proprietary Database