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[174530_at]

Description C55295_rc /REP_DB=TREMBL Accession /GB=C55295 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk395e11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 87      6grp_total > 97      4grp_total > 05      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1252
1 2 3 4 range
A 1260.5
(0.6)
P 		671.4
(-3)
P 		889.7
(-1.7)
P 		1649.2
(3)
P 		978
B 1378
(-0.6)
P 		1022.8
(-3)
P 		1176.5
(-2)
P 		1923.5
(3)
P 		901
C 1007.4
(-3)
P 		1025.4
(-2.9)
P 		1097.1
(-2.3)
P 		1793.9
(3)
P 		787
avr 1215.3
(-0.9) 		906.5
(-3) 		1054.4
(-2) 		1788.9
(3) 		882

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 847
1 2 3 4 5 6 range
A 832.5
(-3)
P 		930.7
(-2.2)
P 		937.7
(-2.2)
P 		901.8
(-2.5)
P 		1592
(3)
P 		1361.2
(1.2)
P 		760
B 1146.7
(1.4)
P 		933.4
(-0.9)
P 		744.9
(-3)
P 		1236
(2.4)
P 		1060.3
(0.5)
P 		1292.3
(3)
P 		547
C 785.6
(-2.9)
P 		779
(-3)
P 		966.5
(-1.4)
P 		953.4
(-1.5)
P 		1110.5
(-0.2)
P 		1500.6
(3)
P 		722
avr 921.6
(-2.5) 		881
(-3) 		883
(-3) 		1030.4
(-1.2) 		1254.3
(1.4) 		1384.7
(3) 		504
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 459
(3)
P 		145.8
(-3)
P 		232.6
(-1.3)
P 		241.4
(-1.2)
P 		313
B 439.4
(3)
P 		252.6
(-3)
P 		272.6
(-2.4)
P 		409.9
(2.1)
P 		187
C 333.5
(-0.3)
P 		294.8
(-3)
P 		382.4
(3)
P 		302.5
(-2.5)
P 		88
avr 410.6
(3) 		231.1
(-3) 		295.9
(-0.8) 		317.9
(-0.1) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 153.5
(-3)
P 		331
(0.3)
P 		204.2
(-2.1)
P 		228.7
(-1.6)
P 		480.4
(3)
P 		331.4
(0.3)
P 		327
B 399
(1.3)
P 		310.7
(-0.4)
P 		180.9
(-3)
P 		327.4
(-0.1)
P 		430.8
(2)
P 		481.9
(3)
P 		301
C 291.2
(-1.1)
P 		237.7
(-2.1)
P 		246
(-2)
P 		191.7
(-3)
P 		359.4
(0.2)
P 		502.3
(3)
P 		311
avr 281.2
(-1.1) 		293.1
(-0.8) 		210.4
(-3) 		249.3
(-2) 		423.5
(2.6) 		438.5
(3) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20658
Sequence Type Exemplar sequence
Representative Public ID C55295 NCBI
Target Description C55295_rc /REP_DB=TREMBL Accession /GB=C55295 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk395e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170978 NCBI Caenorhabditis elegans M03A1.6b (M03A1.6) mRNA, complete cds. 11/11 None
M03A1.6b.3 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4598908:-1 gene:M03A1.6 11/11 A 
M03A1.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4600009:-1 gene:M03A1.6 11/11 A 
M03A1.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:4590940:4597986:-1 gene:M03A1.6 11/11 A 
M03A1.6b.4 ENSEMBL cdna:known chromosome:CEL140:II:4590967:4600385:-1 gene:M03A1.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173795 2 1 NM_170978 174530_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4590975-4591293(-) 100.0 100.0
Public Domain and Genome References
Ensembl M03A1.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL32232 Hypothetical protein M03A1.6b [Caenorhabditis elegans] ref|NP_740975.1| M03A1.6b [Caenorhabditis elegans] 0.0
blast AAA93436 Hypothetical protein M03A1.6a [Caenorhabditis elegans] ref|NP_740976.1| M03A1.6a [Caenorhabditis elegans] 0.0
blast CAE67854 Hypothetical protein CBG13444 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004177 EMBL-EBI DDHD domain 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174530_AT
tcttctcactgggtatccctttttaaagcttttcctcttttttttctccttctctccttc
aactagttgttgtataatatgtatagcttttccctctgaaaatttcagatttttttctgt
gatagtcgcagtctgtctcttttttccggtttctctcttcatccaacacttccagccaaa
cctctttatattttgtattccggtgcgttttagcaactaactatcccaattttcctccaa
aaaaaaacccaccaagtcatattatgtatagcactttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTCACTGGGTATCCCTTTTTA 325 617 20 Antisense
TTCTCTCCTTCAACTAGTTGTTGTA 229 693 69 Antisense
ATATGTATAGCTTTTCCCTCTGAAA 449 21 96 Antisense
GATTTTTTTCTGTGATAGTCGCAGT 225 429 127 Antisense
ATAGTCGCAGTCTGTCTCTTTTTTC 124 23 141 Antisense
CTTCCAGCCAAACCTCTTTATATTT 389 219 188 Antisense
TTTTGTATTCCGGTGCGTTTTAGCA 336 673 210 Antisense
TTCCGGTGCGTTTTAGCAACTAACT 235 697 217 Antisense
AGCAACTAACTATCCCAATTTTCCT 374 67 231 Antisense
AAAAACCCACCAAGTCATATTATGT 180 129 262 Antisense
AGTCATATTATGTATAGCACTTTAT 709 61 274 Antisense
Sequence Source Affymetrix Proprietary Database