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[174529_at]

Description C38721_rc /REP_DB=TREMBL Accession /GB=C38721 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk497d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 03      6grp_total > 15      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4399
1 2 3 4 range
A 4826.2
(-0.1)
P 		2939.2
(-3)
P 		4113.4
(-1.2)
P 		6900.8
(3)
P 		3962
B 5223.2
(3)
P 		4351.8
(1.1)
P 		4015.6
(0.3)
P 		2502.2
(-3)
P 		2721
C 3612.1
(3)
P 		3209.2
(0.5)
P 		2626.3
(-3)
P 		3261
(0.9)
P 		986
avr 4553.8
(3) 		3500.1
(-3) 		3585.1
(-2.5) 		4221.3
(1.1) 		1054

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2904
1 2 3 4 5 6 range
A 3428.4
(-1.3)
P 		3899.7
(3)
P 		3250.1
(-2.9)
P 		3238.1
(-3)
P 		3471.7
(-0.9)
P 		3292.3
(-2.5)
P 		662
B 4552.8
(3)
P 		3387.4
(-0.2)
P 		2375.9
(-3)
P 		2499.3
(-2.7)
P 		2458.5
(-2.8)
P 		3138.4
(-0.9)
P 		2177
C 4158.7
(2.4)
P 		4428.1
(3)
P 		3327.3
(0.6)
P 		2196.9
(-1.8)
P 		2823.8
(-0.5)
P 		1649.2
(-3)
P 		2779
avr 4046.6
(3) 		3905.1
(2.4) 		2984.4
(-1.5) 		2644.8
(-3) 		2918
(-1.8) 		2693.3
(-2.8) 		1402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1224
1 2 3 4 range
A 1757.2
(3)
P 		638
(-3)
P 		1075.3
(-0.7)
P 		1010.1
(-1)
P 		1119
B 1665.6
(3)
P 		1074.8
(-0.1)
P 		930.5
(-0.9)
P 		533.2
(-3)
P 		1132
C 1195.7
(3)
P 		922.7
(0.5)
P 		915.4
(0.4)
P 		549.9
(-3)
P 		646
avr 1539.5
(3) 		878.5
(-1.7) 		973.7
(-1) 		697.7
(-3) 		842

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1142
1 2 3 4 5 6 range
A 632
(-3)
P 		1386.9
(3)
P 		707.8
(-2.4)
P 		821.3
(-1.5)
P 		1047.6
(0.3)
P 		801.6
(-1.7)
P 		755
B 1584.1
(3)
P 		1127.5
(0.3)
P 		576.9
(-3)
P 		662
(-2.5)
P 		998.8
(-0.5)
P 		1170.3
(0.5)
P 		1007
C 1541.5
(3)
P 		1351.2
(2)
P 		846.9
(-0.8)
P 		441.8
(-3)
P 		913.7
(-0.4)
P 		552.1
(-2.4)
P 		1100
avr 1252.5
(2.7) 		1288.5
(3) 		710.5
(-2.4) 		641.7
(-3) 		986.7
(0.2) 		841.3
(-1.1) 		647
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22149
Sequence Type Exemplar sequence
Representative Public ID C38721 NCBI
Target Description C38721_rc /REP_DB=TREMBL Accession /GB=C38721 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk497d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171950(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171950 NCBI Caenorhabditis elegans H28G03.1c (H28G03.1) mRNA, complete cds. 11/11 None
H28G03.1c.2 ENSEMBL cdna:known chromosome:CEL140:X:5216328:5219048:1 gene:H28G03.1 11/11 None
H28G03.1c.1 ENSEMBL cdna:known chromosome:CEL140:X:5216329:5219049:1 gene:H28G03.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180791 3 1 NM_171950 174529_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5218650-5218982(+) 100.0 100.0
Public Domain and Genome References
Ensembl H28G03.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM69104 Hypothetical protein H28G03.1c [Caenorhabditis elegans] ref|NP_741784.1| H28G03.1c [Caenorhabditis elegans] 0.0
blast AAL38959 Hypothetical protein H28G03.1a [Caenorhabditis elegans] ref|NP_741783.1| H28G03.1a [Caenorhabditis elegans] 0.0
blast CAE68714 Hypothetical protein CBG14639 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 5.9E-22
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.1E-6
Sequence
Target Sequence 
>C. ELEGANS:174529_AT
gtctttgaaatacaagtagtgcctttgtagtatgctcattgtcaccctcaacacaaccag
tcccgtttaactttttttttcttcaaaaaattggtttattttcctctctctctcatttaa
ttgtatgctaatcgagtgtctaatgttgtataccccgtcatttctcattttctttcactc
tcttctctttttatcaattctttaattacatccatcaaaactcccatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTTGAAATACAAGTAGTGCCTT 423 447 23 Antisense
GTAGTGCCTTTGTAGTATGCTCATT 189 457 38 Antisense
GTGCCTTTGTAGTATGCTCATTGTC 264 479 41 Antisense
TTGTAGTATGCTCATTGTCACCCTC 457 705 47 Antisense
CTCTCTCATTTAATTGTATGCTAAT 462 231 130 Antisense
GTATGCTAATCGAGTGTCTAATGTT 173 455 145 Antisense
GTGTCTAATGTTGTATACCCCGTCA 167 487 158 Antisense
TAATGTTGTATACCCCGTCATTTCT 155 635 163 Antisense
CTTCTCTTTTTATCAATTCTTTAAT 129 219 204 Antisense
ATCAATTCTTTAATTACATCCATCA 167 27 215 Antisense
AATTACATCCATCAAAACTCCCATC 89 177 226 Antisense
Sequence Source Affymetrix Proprietary Database