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[174528_s_at]

Description C30127_rc /REP_DB=TREMBL Accession /GB=C30127 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237a10 : 3prime end, single read.
Cluster 6grp_total > 58      4grp_total > 13      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 8.3
(-1)
A 		2
(-3)
A 		8.1
(-1.1)
A 		21.1
(3)
A 		19
B 58.2
(3)
A 		32.3
(-1.5)
A 		24
(-3)
A 		45.6
(0.8)
A 		34
C 32.4
(-0.4)
A 		7.2
(-2.6)
A 		3.2
(-3)
A 		71.4
(3)
M 		68
avr 33
(0.7) 		13.8
(-2.6) 		11.8
(-3) 		46
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.8
(-1.4)
A 		10.2
(-3)
A 		18
(-2.2)
A 		18
(-2.2)
A 		14.4
(-2.6)
A 		67.9
(3)
P 		58
B 34.5
(0.3)
A 		34.2
(0.3)
A 		24.7
(-0.8)
A 		4.3
(-3)
A 		33.8
(0.2)
A 		58.9
(3)
P 		55
C 34
(0.5)
A 		19.5
(-1.2)
A 		3.7
(-3)
A 		55.9
(3)
A 		23.9
(-0.7)
A 		43.5
(1.6)
P 		52
avr 31.4
(-0.7) 		21.3
(-2.2) 		15.5
(-3) 		26.1
(-1.5) 		24
(-1.8) 		56.8
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3
(2.8)
A 		0.4
(-3)
A 		2.1
(0.8)
A 		3.1
(3)
A 		3
B 18.6
(3)
A 		8
(-1.9)
A 		5.6
(-3)
A 		9.7
(-1.1)
A 		13
C 10.7
(2.3)
A 		2.1
(-2.4)
A 		1.1
(-3)
A 		12
(3)
M 		11
avr 10.8
(3) 		3.5
(-2.5) 		2.9
(-3) 		8.3
(1.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.8
(-2.4)
A 		3.6
(-3)
A 		3.9
(-2.9)
A 		4.6
(-2.5)
A 		4.4
(-2.6)
A 		16.5
(3)
P 		13
B 12
(0.1)
A 		11.4
(-0)
A 		6
(-1.6)
A 		1.1
(-3)
A 		13.7
(0.6)
A 		22
(3)
P 		21
C 12.6
(2.1)
A 		5.9
(-0.8)
A 		1
(-3)
A 		11.2
(1.5)
A 		7.7
(-0)
A 		14.6
(3)
P 		14
avr 9.8
(-0.4) 		7
(-1.6) 		3.6
(-3) 		5.6
(-2.1) 		8.6
(-0.9) 		17.7
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174528_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20213
Sequence Type Exemplar sequence
Representative Public ID C30127 NCBI
Target Description C30127_rc /REP_DB=TREMBL Accession /GB=C30127 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk237a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061098 NCBI Caenorhabditis elegans F49B2.1 (F49B2.1) mRNA, complete cds. 11/11 A 
SNAP00000010603 ENSEMBL cdna:SNAP chromosome:CEL140:I:14306873:14315252:1 11/11 None
GENEFINDER00000010616 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14306873:14308065:1 11/11 None
GENEFINDER00000010611 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14310905:14315252:1 11/11 None
F49B2.1 ENSEMBL cdna:known chromosome:CEL140:I:14306873:14315252:1 gene:F49B2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14310935-14311221(+) 100.0 100.0
chrI:14307471-14307757(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F49B2.1
Entrez Gene 173295 Entrez gene
SwissProt O45535 EMBL-EBI
WormBase CE28559 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 0.0
blast CAB04423 Hypothetical protein F49B2.1 [Caenorhabditis elegans] ref|NP_493499.1| F49B2.1 [Caenorhabditis elegans] 1.0E-168
blast T29660 hypothetical protein R08C7.9 - Caenorhabditis elegans 8.0E-23
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 2.0E-17
blast AAB92036 Hypothetical protein E04A4.1 [Caenorhabditis elegans] ref|NP_500625.2| E04A4.1 [Caenorhabditis elegans] 6.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-7
Sequence
Target Sequence 
>C. ELEGANS:174528_S_AT
gacctactactttgcaatagccggagagtggttgtgcgcgcgagatgggacctgaaggac
ctgaacacgttcctgaagcactgggcagcaggggtaaggagattggaaaagctagttgtt
gggcatcagaatctaccgagaactttgaatcagcggatggctagcttgttccaagggatc
agtcatgaggttttgccgaaggatcgtgtgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTACTACTTTGCAATAGCCGGA 699 381 15 Antisense
ATAGCCGGAGAGTGGTTGTGCGCGC 622 21 31 Antisense
GCGCGCGAGATGGGACCTGAAGGAC 637 285 50 Antisense
GGACCTGAACACGTTCCTGAAGCAC 584 523 71 Antisense
GAAGCACTGGGCAGCAGGGGTAAGG 95 341 89 Antisense
GTTGTTGGGCATCAGAATCTACCGA 537 435 129 Antisense
AATCTACCGAGAACTTTGAATCAGC 25 171 144 Antisense
GAATCAGCGGATGGCTAGCTTGTTC 5 329 161 Antisense
GCTAGCTTGTTCCAAGGGATCAGTC 384 303 174 Antisense
GGGATCAGTCATGAGGTTTTGCCGA 686 493 189 Antisense
GGTTTTGCCGAAGGATCGTGTGACA 201 505 203 Antisense
Sequence Source Affymetrix Proprietary Database