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[174525_at]

Description CEK008H4R_rc /REP_DB=TREMBL Accession /GB=D34572 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8h4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 83      6grp_total > 37      4grp_total > 56      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 440
1 2 3 4 range
A 418.4
(-0.9)
P 		520.7
(1.4)
P 		588.6
(3)
P 		328
(-3)
P 		261
B 650.6
(3)
P 		533.2
(-2.3)
P 		516.5
(-3)
P 		637.5
(2.4)
P 		134
C 416.7
(-2.7)
P 		535.3
(-0.8)
P 		768.1
(3)
P 		398.1
(-3)
P 		370
avr 495.2
(-1.6) 		529.7
(-0.3) 		624.4
(3) 		454.5
(-3) 		170

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 544
1 2 3 4 5 6 range
A 555.2
(2.2)
P 		510
(1.3)
P 		285.4
(-3)
P 		289.9
(-2.9)
P 		321.9
(-2.3)
P 		595.2
(3)
P 		310
B 735.3
(3)
P 		422
(-0.5)
P 		280.7
(-2)
P 		339.5
(-1.4)
P 		191.3
(-3)
P 		533
(0.8)
P 		544
C 680.8
(3)
P 		419.9
(-0.5)
P 		374.2
(-1.2)
P 		237.6
(-3)
P 		277
(-2.5)
P 		668.5
(2.8)
P 		443
avr 657.1
(3) 		450.6
(-0.1) 		313.4
(-2.2) 		289
(-2.6) 		263.4
(-3) 		598.9
(2.1) 		394
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 220
1 2 3 4 range
A 152.4
(2.9)
P 		113
(0.7)
P 		153.9
(3)
P 		48
(-3)
P 		106
B 207.5
(3)
P 		131.7
(-2.2)
P 		119.7
(-3)
P 		135.8
(-1.9)
P 		88
C 137.9
(-0.9)
P 		153.9
(-0.4)
P 		267.7
(3)
P 		67.1
(-3)
P 		201
avr 165.9
(2.1) 		132.9
(0.1) 		180.4
(3) 		83.6
(-3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 102.4
(-1)
P 		181.4
(3)
P 		62.2
(-3)
P 		73.5
(-2.4)
P 		97.1
(-1.2)
P 		144.9
(1.2)
P 		119
B 255.8
(3)
P 		140.5
(-0.7)
P 		68.2
(-3)
P 		89.9
(-2.3)
P 		77.7
(-2.7)
P 		198.8
(1.2)
P 		188
C 252.4
(3)
P 		128.1
(-0.6)
P 		95.2
(-1.6)
P 		47.8
(-3)
P 		89.6
(-1.8)
P 		223.8
(2.2)
P 		205
avr 203.5
(3) 		150
(0.6) 		75.2
(-2.8) 		70.4
(-3) 		88.1
(-2.2) 		189.2
(2.4) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21852
Sequence Type Exemplar sequence
Representative Public ID CEK008H4R NCBI
Target Description CEK008H4R_rc /REP_DB=TREMBL Accession /GB=D34572 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk8h4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074843 NCBI Caenorhabditis elegans Y102A5A.1 (Y102A5A.1) mRNA, complete cds. 11/11 None
Y102A5A.1 ENSEMBL cdna:known chromosome:CEL140:V:16805455:16817142:1 gene:Y102A5A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16816753-16817131(+) 56.61 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102A5A.1
Entrez Gene 180125 Entrez gene
SwissProt Q9XTJ0 EMBL-EBI
WormBase CE20378 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:20501_AT TIP120 protein, putative at
ATH1-121501:267269_AT TIP120 protein, putative at
CANINE_2:CFA.1566.1.A1_AT similar to TIP120 protein cfa
CANINE_2:CFAAFFX.1565.1.S1_S_AT similar to TIP120 protein cfa
DROSOPHILA_2:1641608_AT dm
DROSGENOME1:152136_AT dm
CHICKEN:GGAAFFX.6212.1.S1_AT similar to TIP120 protein gga
HG-U133_PLUS_2:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:208838_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:208839_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133A_2:207483_S_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:AA127605_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:RC_AA236485_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:H01766_S_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBA:RC_AA491234_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBB:RC_R49406_AT cullin-associated and neddylation-dissociated 1 hs
HU35KSUBD:RC_R46045_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:G8924259_3P_S_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:G12053130_3P_A_AT cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS.200073.0.A1_3P_S_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:239771_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133B:239771_AT cullin-associated and neddylation-dissociated 1 hs
HG-U95AV2:32196_AT cullin-associated and neddylation-dissociated 1 hs
HG-U95D:68781_AT cullin-associated and neddylation-dissociated 1 hs
HG-U133_PLUS_2:1556318_S_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:1556318_3P_S_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS2.397035.1.A1_3P_AT Cullin-associated and neddylation-dissociated 1 hs
U133_X3P:HS2.397035.1.A1_3P_S_AT Cullin-associated and neddylation-dissociated 1 hs
MG-U74AV2:99338_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:106255_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:114221_AT cullin associated and neddylation disassociated 1 mm
MG-U74BV2:111628_AT cullin associated and neddylation disassociated 1 mm
MG-U74CV2:138798_AT cullin associated and neddylation disassociated 1 mm
MG-U74CV2:170409_I_AT cullin associated and neddylation disassociated 1 mm
MOE430A:1428648_AT cullin associated and neddylation disassociated 1 mm
MOUSE430A_2:1428648_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1428648_AT cullin associated and neddylation disassociated 1 mm
MOE430A:1428649_AT cullin associated and neddylation disassociated 1 mm
MOUSE430A_2:1428649_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1428649_AT cullin associated and neddylation disassociated 1 mm
MOE430B:1435781_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1435781_AT cullin associated and neddylation disassociated 1 mm
MOE430B:1455751_AT cullin associated and neddylation disassociated 1 mm
MOUSE430_2:1455751_AT cullin associated and neddylation disassociated 1 mm
MU19KSUBB:TC31430_AT cullin associated and neddylation disassociated 1 mm
MU11KSUBA:R75103_RC_AT MKIAA0829 protein mm
RG-U34A:E12829CDS_AT TBP-interacting protein 120A rn
RG-U34A:RC_AI230395_AT TBP-interacting protein 120A rn
RAE230A:1367972_AT TBP-interacting protein 120A rn
RAT230_2:1367972_AT TBP-interacting protein 120A rn
Protein Similarities
Method ID Description E-Value
blast CAB04744 Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] emb|CAA19440.1| Hypothetical protein Y102A5A.1 [Caenorhabditis elegans] ref|NP_507244.1| Y102A5A.1 [Caenorhabditis elegans] 0.0
blast CAE56254 Hypothetical protein CBG23895 [Caenorhabditis briggsae] 0.0
blast XP_393409 PREDICTED: similar to mKIAA0829 protein [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007723 EMBL-EBI TBP-interacting 120 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174525_AT
tgtctaccggacttttgaattttgcgtaaaaaatacggtctcggtactgtagtttcaaac
ttttttctcggcgggattttcaatgatttctcatggttccaccacaaaagttttaaatta
cagtaatttttaaaggcgcacacatttttttgcatgcaacaaaaattgtcgtgctgagac
ccgtatttttcggccaaattttcgcgtctggataatatcaatttccccttttcccctggc
tactctatactgtcatcgcgagtcgatttccccacttttgtgtgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTACCGGACTTTTGAATTTTGC 276 553 37 Antisense
ATACGGTCTCGGTACTGTAGTTTCA 286 1 69 Antisense
TTTTCTCGGCGGGATTTTCAATGAT 430 675 99 Antisense
AATGATTTCTCATGGTTCCACCACA 499 163 118 Antisense
CACACATTTTTTTGCATGCAACAAA 103 195 175 Antisense
AAATTGTCGTGCTGAGACCCGTATT 122 115 199 Antisense
GCTGAGACCCGTATTTTTCGGCCAA 303 287 209 Antisense
TCGGCCAAATTTTCGCGTCTGGATA 709 605 226 Antisense
GGCTACTCTATACTGTCATCGCGAG 572 537 274 Antisense
TACTGTCATCGCGAGTCGATTTCCC 476 643 284 Antisense
TCGATTTCCCCACTTTTGTGTGTAA 418 603 299 Antisense
Sequence Source Affymetrix Proprietary Database