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[174524_at]

Description CEC3163_rc /REP_DB=TREMBL Accession /GB=C10316 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk144a2 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 41      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 19
(-3)
A 		89.6
(3)
P 		68.4
(1.2)
A 		21.1
(-2.8)
A 		71
B 46.9
(-0)
A 		36.3
(-3)
A 		49.2
(0.6)
A 		57.8
(3)
A 		22
C 16.1
(-3)
A 		54.1
(1.4)
A 		59.1
(2)
A 		67.6
(3)
A 		52
avr 27.3
(-3) 		60
(3) 		58.9
(2.8) 		48.8
(0.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 107.8
(3)
M 		15.1
(-3)
A 		20.7
(-2.6)
A 		25.4
(-2.3)
A 		73.8
(0.8)
A 		94.2
(2.1)
P 		93
B 23.4
(-2.9)
A 		22.2
(-3)
A 		48.7
(-1.4)
A 		34.6
(-2.3)
A 		124.5
(3)
P 		105.1
(1.9)
P 		102
C 9.3
(-3)
A 		46.7
(-0.1)
A 		33.3
(-1.2)
A 		75.3
(2.1)
A 		33.9
(-1.1)
A 		87.4
(3)
P 		78
avr 46.8
(-1.3) 		28
(-3) 		34.2
(-2.4) 		45.1
(-1.5) 		77.4
(1.4) 		95.6
(3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.9
(-1.6)
A 		19.5
(3)
P 		17.9
(2.4)
A 		3.1
(-3)
A 		16
B 14.9
(3)
A 		9
(-3)
A 		11.4
(-0.6)
A 		12.3
(0.4)
A 		6
C 5.3
(-3)
A 		15.5
(1)
A 		20.6
(3)
A 		11.4
(-0.6)
A 		15
avr 9
(-2.9) 		14.7
(1.5) 		16.6
(3) 		8.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 19.9
(2)
M 		5.4
(-2.7)
A 		4.5
(-3)
A 		6.4
(-2.4)
A 		22.3
(2.8)
A 		22.9
(3)
P 		18
B 8.2
(-2.9)
A 		7.4
(-3)
A 		11.8
(-2.4)
A 		9.2
(-2.8)
A 		50.6
(3)
P 		39.2
(1.4)
P 		43
C 3.4
(-3)
A 		14.2
(-0.5)
A 		8.5
(-1.8)
A 		15.1
(-0.3)
A 		11
(-1.2)
A 		29.3
(3)
P 		26
avr 10.5
(-2.4) 		9
(-2.8) 		8.3
(-3) 		10.2
(-2.5) 		28
(2.3) 		30.5
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21167
Sequence Type Exemplar sequence
Representative Public ID CEC3163 NCBI
Target Description CEC3163_rc /REP_DB=TREMBL Accession /GB=C10316 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk144a2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067090(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067090 NCBI Caenorhabditis elegans Y66D12A.11 (Y66D12A.11) mRNA, complete cds. 11/11 None
SNAP00000020814 ENSEMBL cdna:SNAP chromosome:CEL140:III:11561047:11565395:1 11/11 None
GENEFINDER00000020841 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11563422:11565395:1 11/11 None
Y66D12A.11 ENSEMBL cdna:known chromosome:CEL140:III:11563406:11565395:1 gene:Y66D12A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11565070-11565347(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y66D12A.11
Entrez Gene 176586 Entrez gene
SwissProt Q95Q04 EMBL-EBI
WormBase CE28793 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70133 Hypothetical protein Y66D12A.11 [Caenorhabditis elegans] ref|NP_499491.1| Y66D12A.11 [Caenorhabditis elegans] 1.0E-175
blast CAC70133 Hypothetical protein Y66D12A.11 [Caenorhabditis elegans] ref|NP_499491.1| Y66D12A.11 [Caenorhabditis elegans] 1.0E-172
blast CAC70133 Hypothetical protein Y66D12A.11 [Caenorhabditis elegans] ref|NP_499491.1| Y66D12A.11 [Caenorhabditis elegans] 1.0E-163
blast CAC70134 Hypothetical protein Y66D12A.12 [Caenorhabditis elegans] ref|NP_499490.1| Y66D12A.12 [Caenorhabditis elegans] 1.0E-149
blast AAA50690 Hypothetical protein ZK418.6 [Caenorhabditis elegans] ref|NP_498545.1| ZK418.6 [Caenorhabditis elegans] 1.0E-101
blast AAA50690 Hypothetical protein ZK418.6 [Caenorhabditis elegans] ref|NP_498545.1| ZK418.6 [Caenorhabditis elegans] 1.0E-100
blast CAE67694 Hypothetical protein CBG13262 [Caenorhabditis briggsae] 1.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499491.1 1 306-328
Y66D12A.11 1 306-328
SNAP00000020814 1 622-644
GENEFINDER00000020841 1 319-341
Sequence
Target Sequence 
>C. ELEGANS:174524_AT
cccgaatcacgaccagatccgaatttaatcattttaccggctccaactaatgatctaccg
ccggcaaaatccccgatgcaccatgttatcaagcaagacaaggatatcccatcccctgga
gcatcgtctggctccactcaagccccggaacattctgctattccatcaatttcgatgatt
cgaaagatggagcgcattttctacagctcggagtccagctgttggttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCGAATCACGACCAGATCCGAATT 350 261 31 Antisense
ATCACGACCAGATCCGAATTTAATC 274 27 36 Antisense
GAATTTAATCATTTTACCGGCTCCA 561 321 51 Antisense
TACCGGCTCCAACTAATGATCTACC 93 649 65 Antisense
CTCCAACTAATGATCTACCGCCGGC 249 235 71 Antisense
AATGATCTACCGCCGGCAAAATCCC 696 161 79 Antisense
CAAGACAAGGATATCCCATCCCCTG 647 183 124 Antisense
TCAAGCCCCGGAACATTCTGCTATT 30 633 168 Antisense
ATTCTGCTATTCCATCAATTTCGAT 275 11 182 Antisense
AAGATGGAGCGCATTTTCTACAGCT 304 155 214 Antisense
AGCTCGGAGTCCAGCTGTTGGTTGA 570 77 235 Antisense
Sequence Source Affymetrix Proprietary Database