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[174522_at]

Description CEC5713_rc /REP_DB=TREMBL Accession /GB=C10571 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk149b6 : 3prime end, single read.
Cluster 6grp_total > 89      4grp_total > 02      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 24.3
(-3)
A 		35.9
(-1.9)
A 		27.7
(-2.7)
A 		90
(3)
A 		66
B 21.3
(-2.7)
A 		20.6
(-3)
A 		32.9
(3)
A 		22.3
(-2.2)
A 		12
C 26.3
(-1.2)
A 		18
(-1.9)
A 		5.7
(-3)
A 		74.4
(3)
P 		69
avr 24
(-2.7) 		24.8
(-2.6) 		22.1
(-3) 		62.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 51
(-2.2)
A 		23.3
(-3)
A 		32.2
(-2.7)
A 		26.7
(-2.9)
A 		183.6
(1.7)
P 		226.3
(3)
P 		203
B 46.8
(-1.7)
A 		12.2
(-2.8)
A 		63.4
(-1.1)
A 		5.8
(-3)
A 		154.8
(1.8)
A 		192.3
(3)
P 		187
C 26.5
(-2.2)
A 		71
(-0.5)
A 		7
(-3)
A 		32
(-2)
A 		104.4
(0.8)
A 		159.3
(3)
P 		152
avr 41.4
(-2.3) 		35.5
(-2.5) 		34.2
(-2.6) 		21.5
(-3) 		147.6
(1.4) 		192.6
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.9
(-1.4)
A 		7.8
(-2.5)
A 		7.3
(-3)
A 		13.2
(3)
A 		6
B 6.8
(1.3)
A 		5.1
(-2.2)
A 		7.6
(3)
A 		4.7
(-3)
A 		3
C 8.7
(0.8)
A 		5.2
(-1.2)
A 		2
(-3)
A 		12.5
(3)
P 		11
avr 8.1
(0.3) 		6
(-2.5) 		5.6
(-3) 		10.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 9.4
(-2.7)
A 		8.3
(-2.8)
A 		7
(-3)
A 		6.8
(-3)
A 		55.4
(3)
P 		55.1
(3)
P 		49
B 16.3
(-1.7)
A 		4.1
(-2.8)
A 		15.4
(-1.8)
A 		1.5
(-3)
A 		62.9
(2.2)
A 		71.7
(3)
P 		70
C 9.8
(-2.1)
A 		21.7
(-0.7)
A 		1.8
(-3)
A 		6.4
(-2.5)
A 		33.8
(0.7)
A 		53.3
(3)
P 		52
avr 11.8
(-2.2) 		11.4
(-2.3) 		8.1
(-2.7) 		4.9
(-3) 		50.7
(2) 		60
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21648
Sequence Type Exemplar sequence
Representative Public ID CEC5713 NCBI
Target Description CEC5713_rc /REP_DB=TREMBL Accession /GB=C10571 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk149b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037034 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3909405:3909749:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037033 2/11 Cross Hyb Matching Probes None
GENEFINDER00000037050 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3909442-3909724(+) 100.0 100.0
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000037034 2 7-24,66-88
Sequence
Target Sequence 
>C. ELEGANS:174522_AT
tcattgctcttcgttttcgtactgatggatgaggagtttgacaaaaaagttgcaaaaatg
aacaatgaccatgataaaaaagttgcgaagaacaatgaagcttacgacaaagccgtcgca
gaacaaaaatcaatgtgggataagtttttggcatacggtaccgccgtggttgtggtcgtt
tttgttgtgcccattctgatttcaattgctgcaagtgtcattacgtgtatcctggttcgt
cgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTGCTCTTCGTTTTCGTACTGA 101 619 14 Antisense
GCTCTTCGTTTTCGTACTGATGGAT 186 301 19 Antisense
GAAGCTTACGACAAAGCCGTCGCAG 185 341 110 Antisense
GACAAAGCCGTCGCAGAACAAAAAT 493 363 119 Antisense
ATGTGGGATAAGTTTTTGGCATACG 675 49 146 Antisense
CATACGGTACCGCCGTGGTTGTGGT 448 209 165 Antisense
GTTGTGGTCGTTTTTGTTGTGCCCA 380 437 182 Antisense
TTTTGTTGTGCCCATTCTGATTTCA 190 679 193 Antisense
GCCCATTCTGATTTCAATTGCTGCA 209 287 202 Antisense
GCAAGTGTCATTACGTGTATCCTGG 510 321 224 Antisense
CATTACGTGTATCCTGGTTCGTCGC 600 213 232 Antisense
Sequence Source Affymetrix Proprietary Database