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[174521_at]

Description C32531_rc /REP_DB=TREMBL Accession /GB=C32531 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk332c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      6grp_highest_nonorm > 90      6grp_total > 24      4grp_total > 30      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 152.5
(3)
P 		100.5
(-0.7)
P 		67.8
(-3)
A 		128.7
(1.3)
P 		85
B 152.8
(3)
P 		101.5
(-2.5)
P 		97.1
(-3)
M 		145.1
(2.2)
P 		56
C 238.7
(3)
P 		116.8
(-1.8)
P 		87.8
(-3)
M 		163.1
(-0)
P 		151
avr 181.3
(3) 		106.3
(-1.6) 		84.2
(-3) 		145.6
(0.8) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 223.3
(3)
P 		213.2
(2.5)
P 		177.9
(0.6)
P 		146.4
(-1)
P 		116.1
(-2.5)
P 		107.4
(-3)
P 		116
B 161.1
(0.5)
P 		216.5
(3)
P 		203.2
(2.4)
P 		97.3
(-2.4)
P 		133.7
(-0.7)
P 		83.5
(-3)
P 		133
C 218.4
(2.7)
P 		224.5
(3)
P 		134.9
(-1.3)
P 		164.1
(0.1)
P 		103.9
(-2.8)
P 		100
(-3)
P 		125
avr 200.9
(2.1) 		218.1
(3) 		172
(0.7) 		135.9
(-1.1) 		117.9
(-2) 		97
(-3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 55.5
(3)
P 		21.8
(-2.3)
P 		17.7
(-3)
A 		18.8
(-2.8)
P 		38
B 48.7
(3)
P 		25.1
(-2.4)
P 		22.5
(-3)
M 		30.9
(-1.1)
P 		26
C 79
(3)
P 		33.6
(-2.3)
P 		30.6
(-2.6)
M 		27.5
(-3)
P 		52
avr 61.1
(3) 		26.8
(-2.5) 		23.6
(-3) 		25.7
(-2.7) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 41.2
(-1.2)
P 		75.8
(3)
P 		38.7
(-1.5)
P 		37.1
(-1.7)
P 		35
(-1.9)
P 		26.2
(-3)
P 		50
B 56
(0.9)
P 		72.1
(3)
P 		49.3
(0)
P 		25.8
(-3)
P 		54.3
(0.7)
P 		31.1
(-2.3)
P 		46
C 81
(3)
P 		68.5
(1.4)
P 		34.3
(-2.8)
P 		33
(-3)
P 		33.6
(-2.9)
P 		33.5
(-2.9)
P 		48
avr 59.4
(1.2) 		72.1
(3) 		40.8
(-1.5) 		32
(-2.8) 		41
(-1.5) 		30.3
(-3) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21473
Sequence Type Exemplar sequence
Representative Public ID C32531 NCBI
Target Description C32531_rc /REP_DB=TREMBL Accession /GB=C32531 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk332c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K08E7.6 ENSEMBL cdna:known chromosome:CEL140:IV:12578889:12581090:-1 gene:K08E7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042647 6/11 Cross Hyb Matching Probes None
GENEFINDER00000042654 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12578904-12579182(-) 100.0 100.0
Public Domain and Genome References
Ensembl K08E7.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01229 Hypothetical protein K08E7.6 [Caenorhabditis elegans] ref|NP_502410.1| K08E7.6 [Caenorhabditis elegans] 1.0E-127
blast CAE67914 Hypothetical protein CBG13511 [Caenorhabditis briggsae] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:174521_AT
aaattgccagttatcaacgccagctccaactctacgatgatcaacaacaacatcaatctc
tagcgtctgaaatagcatcgtcgagtagtccaaacgaatttctgaacatgaaaattaatg
ggtttttgaaaagccatagtccataactttttagattttttcttatttatatttttttaa
acaatcacttgcgatctctagttgtcttccttgaataattccaatttcacacacacaatc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTGCCAGTTATCAACGCCAGCT 170 115 19 Antisense
CAGCTCCAACTCTACGATGATCAAC 34 205 39 Antisense
ACAACAACATCAATCTCTAGCGTCT 195 113 62 Antisense
TAGCGTCTGAAATAGCATCGTCGAG 491 649 79 Antisense
ATAGCATCGTCGAGTAGTCCAAACG 231 23 90 Antisense
GAGTAGTCCAAACGAATTTCTGAAC 345 397 101 Antisense
AAGCCATAGTCCATAACTTTTTAGA 453 147 149 Antisense
AAACAATCACTTGCGATCTCTAGTT 291 129 197 Antisense
GATCTCTAGTTGTCTTCCTTGAATA 691 417 211 Antisense
GTTGTCTTCCTTGAATAATTCCAAT 422 437 219 Antisense
AATTCCAATTTCACACACACAATCA 230 179 235 Antisense
Sequence Source Affymetrix Proprietary Database