[Home] | [Total List]

[174519_at]

Description CEK003E3R_rc /REP_DB=TREMBL Accession /GB=D27764 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 21      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 505.8
(2.2)
P 		325.7
(-2.6)
P 		312
(-3)
P 		537.2
(3)
P 		225
B 496.4
(-0.1)
P 		490.4
(-0.3)
P 		392.9
(-3)
P 		606
(3)
P 		213
C 505.4
(3)
P 		333.6
(-2.5)
P 		318.7
(-3)
P 		461.8
(1.6)
P 		187
avr 502.5
(2) 		383.2
(-1.7) 		341.2
(-3) 		535
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 608.7
(3)
P 		387.8
(-0.5)
P 		247.3
(-2.8)
P 		233.5
(-3)
P 		497.7
(1.2)
P 		430.1
(0.1)
P 		375
B 520.5
(3)
P 		417.5
(0.5)
P 		276.3
(-3)
P 		360.9
(-0.9)
P 		390.5
(-0.2)
P 		475.3
(1.9)
P 		244
C 439.1
(2.3)
P 		380.8
(0.4)
P 		279.2
(-2.9)
P 		275.3
(-3)
P 		460.2
(3)
P 		361.3
(-0.2)
P 		185
avr 522.8
(3) 		395.4
(0) 		267.6
(-3) 		289.9
(-2.5) 		449.5
(1.3) 		422.2
(0.6) 		255
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 184.1
(3)
P 		70.7
(-3)
P 		81.6
(-2.4)
P 		78.6
(-2.6)
P 		113
B 158.3
(3)
P 		121.1
(-0.3)
P 		91.1
(-3)
P 		129.1
(0.4)
P 		67
C 167.3
(3)
P 		95.9
(-1.8)
P 		111.1
(-0.8)
P 		77.9
(-3)
P 		89
avr 169.9
(3) 		95.9
(-2.9) 		94.6
(-3) 		95.2
(-3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 112.2
(0.6)
P 		137.9
(2.2)
P 		53.9
(-3)
P 		59.2
(-2.7)
P 		150.2
(3)
P 		104.7
(0.2)
P 		96
B 181.1
(3)
P 		139
(0.8)
P 		67.1
(-3)
P 		95.6
(-1.5)
P 		158.7
(1.8)
P 		177.2
(2.8)
P 		114
C 162.8
(3)
P 		116.2
(0.4)
P 		71.1
(-2.1)
P 		55.4
(-3)
P 		148.9
(2.2)
P 		121
(0.7)
P 		107
avr 152
(3) 		131
(1.5) 		64
(-3) 		70.1
(-2.6) 		152.6
(3) 		134.3
(1.8) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20292
Sequence Type Exemplar sequence
Representative Public ID CEK003E3R NCBI
Target Description CEK003E3R_rc /REP_DB=TREMBL Accession /GB=D27764 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F26H9.2 ENSEMBL cdna:known chromosome:CEL140:I:9297889:9302130:-1 gene:F26H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9297829-9298200(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26H9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04203 Hypothetical protein F26H9.2 [Caenorhabditis elegans] ref|NP_492478.1| F26H9.2 [Caenorhabditis elegans] 0.0
blast CAE72326 Hypothetical protein CBG19471 [Caenorhabditis briggsae] 1.0E-172
blast AAH12871 Phactr2 protein [Mus musculus] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR004018 EMBL-EBI RPEL repeat 1.4E-13
Pfam IPR004018 EMBL-EBI RPEL repeat 5.3E-12
Sequence
Target Sequence 
>C. ELEGANS:174519_AT
tcttcaattttcccctaatttcttgtttaaataattaatactattgaaaagtatcaaaaa
aaatctctctcccttcccctcattcgaaattctctgggatttatatatattttgtttgtc
ttgctctaatctcgataattctctgaaaatatttcagttcaatccccccaacaccccatt
ttgaaattgattttctcaaaatcatgtgaaaacacacatagatcacttaccagtttctag
ccggttgacccaagtcttctattgctattaatctatcgagaattcgttttttgtaccata
ct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCAATTTTCCCCTAATTTCTTG 23 617 43 Antisense
TATCAAAAAAAATCTCTCTCCCTTC 33 653 94 Antisense
TGTTTGTCTTGCTCTAATCTCGATA 387 561 155 Antisense
GCTCTAATCTCGATAATTCTCTGAA 83 301 165 Antisense
TGAAAATATTTCAGTTCAATCCCCC 519 573 186 Antisense
CCCAACACCCCATTTTGAAATTGAT 206 257 209 Antisense
AAACACACATAGATCACTTACCAGT 395 129 252 Antisense
CACTTACCAGTTTCTAGCCGGTTGA 149 197 266 Antisense
GGTTGACCCAAGTCTTCTATTGCTA 9 509 285 Antisense
GTCTTCTATTGCTATTAATCTATCG 141 469 296 Antisense
GAGAATTCGTTTTTTGTACCATACT 631 387 320 Antisense
Sequence Source Affymetrix Proprietary Database