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[174518_at]

Description C58478_rc /REP_DB=TREMBL Accession /GB=C58478 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365f12 : 3prime end, single read.
Cluster 6grp_total > 79      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 29.3
(-1.9)
A 		10.6
(-3)
A 		15.6
(-2.7)
A 		108.3
(3)
A 		98
B 39.8
(-1.3)
A 		66.1
(0.1)
A 		6.8
(-3)
A 		123.4
(3)
A 		117
C 73.5
(2.9)
A 		42.7
(0.2)
A 		7
(-3)
A 		74.5
(3)
A 		68
avr 47.5
(-0.5) 		39.8
(-1) 		9.8
(-3) 		102.1
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 61.5
(0.3)
A 		52.5
(-1.2)
A 		41.4
(-3)
A 		62.9
(0.5)
A 		78.4
(3)
A 		73
(2.1)
A 		37
B 45.2
(-0.3)
A 		40.2
(-0.8)
A 		18.7
(-3)
A 		31.4
(-1.7)
A 		62.9
(1.6)
P 		76.8
(3)
P 		58
C 48.7
(-1.1)
A 		64.7
(0.1)
A 		34.2
(-2.1)
A 		22.4
(-3)
A 		65.7
(0.1)
P 		105.6
(3)
P 		83
avr 51.8
(-0.7) 		52.5
(-0.6) 		31.4
(-3) 		38.9
(-2.2) 		69
(1.2) 		85.1
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 10.7
(0.7)
A 		2.3
(-3)
A 		4.1
(-2.2)
A 		15.9
(3)
A 		14
B 12.7
(-0.3)
A 		16.3
(0.6)
A 		1.6
(-3)
A 		26.3
(3)
A 		25
C 24.3
(3)
A 		12.3
(-0.3)
A 		2.4
(-3)
A 		12.6
(-0.2)
A 		22
avr 15.9
(2.1) 		10.3
(-0.1) 		2.7
(-3) 		18.3
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.3
(-2.1)
A 		18.7
(1)
A 		9
(-3)
A 		16
(-0.1)
A 		23.7
(3)
A 		17.8
(0.6)
A 		15
B 15.7
(-0.2)
A 		13.4
(-0.8)
A 		4.5
(-3)
A 		8.3
(-2.1)
A 		25.5
(2.2)
P 		28.6
(3)
P 		24
C 18
(-0.4)
A 		19.8
(-0)
A 		8.7
(-2.2)
A 		4.5
(-3)
A 		21.3
(0.3)
P 		35.3
(3)
P 		31
avr 15
(-0.7) 		17.3
(0) 		7.4
(-3) 		9.6
(-2.3) 		23.5
(1.9) 		27.2
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174518_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21209
Sequence Type Exemplar sequence
Representative Public ID C58478 NCBI
Target Description C58478_rc /REP_DB=TREMBL Accession /GB=C58478 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk365f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067038(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067038 NCBI Caenorhabditis elegans Y47D3A.5 (Y47D3A.5) mRNA, complete cds. 11/11 None
SNAP00000007204 ENSEMBL cdna:SNAP chromosome:CEL140:III:11141314:11169973:-1 11/11 None
GENEFINDER00000007298 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11168800:11170109:-1 11/11 None
Y47D3A.5 ENSEMBL cdna:known chromosome:CEL140:III:11168800:11170438:-1 gene:Y47D3A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11168821-11169605(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3A.5
Entrez Gene 176547 Entrez gene
SwissProt Q9U2D1 EMBL-EBI
WormBase CE34122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 1.0E-88
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 9.0E-88
blast CAE18009 Hypothetical protein Y47D3A.31 [Caenorhabditis elegans] ref|NP_001022878.1| Y47D3A.31 [Caenorhabditis elegans] 7.0E-87
blast CAB55095 Hypothetical protein Y47D3A.5 [Caenorhabditis elegans] ref|NP_499439.2| Y47D3A.5 [Caenorhabditis elegans] 4.0E-84
blast AAB04603 Hypothetical protein T28H11.7 [Caenorhabditis elegans] ref|NP_500703.1| T28H11.7 [Caenorhabditis elegans] 2.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499439.2 1 181-203
Y47D3A.5 1 181-203
SNAP00000007204 1 182-204
GENEFINDER00000007298 1 199-221
Sequence
Target Sequence 
>C. ELEGANS:174518_AT
aaagttcagcacccgatgagtcgaccatcgctgcaacgcctaaaaaatcgtcgaaaaaat
caccgaaagaacagaattatgacgatgaagtctcggttcgtgatagcctttttgaagatg
ttggcgatacaaagtcgccgccggattttcttactgttcgtgtctgtaatgttctcgtgc
tcattctttcttcaattgtcttcagtatttggattctcaccactctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTCAGCACCCGATGAGTCGAC 507 121 16 Antisense
CGATGAGTCGACCATCGCTGCAACG 415 247 29 Antisense
ATGACGATGAAGTCTCGGTTCGTGA 471 45 94 Antisense
TCTCGGTTCGTGATAGCCTTTTTGA 559 609 106 Antisense
GTTGGCGATACAAAGTCGCCGCCGG 576 433 135 Antisense
TACAAAGTCGCCGCCGGATTTTCTT 56 641 143 Antisense
GGATTTTCTTACTGTTCGTGTCTGT 193 505 158 Antisense
TCGTGTCTGTAATGTTCTCGTGCTC 668 605 173 Antisense
TGCTCATTCTTTCTTCAATTGTCTT 273 581 193 Antisense
TTGTCTTCAGTATTTGGATTCTCAC 50 707 211 Antisense
AGTATTTGGATTCTCACCACTCTCG 171 61 219 Antisense
Sequence Source Affymetrix Proprietary Database