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[174517_at]

Description C56917_rc /REP_DB=TREMBL Accession /GB=C56917 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307f11 : 3prime end, single read.
Cluster 6grp_total > 98      4grp_total > 07      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 39.8
(2)
A 		2.8
(-3)
A 		28.1
(0.4)
A 		47.2
(3)
A 		44
B 17.8
(-0.7)
A 		5.9
(-3)
A 		22
(0.1)
A 		37.2
(3)
P 		31
C 21.8
(3)
A 		14.7
(-0.4)
A 		9.1
(-3)
A 		16.5
(0.5)
A 		13
avr 26.5
(1.3) 		7.8
(-3) 		19.7
(-0.2) 		33.6
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 22.7
(-1.4)
A 		7.4
(-3)
A 		18.3
(-1.9)
A 		11.7
(-2.6)
A 		65.7
(3)
P 		52.6
(1.7)
P 		58
B 4.1
(-2.8)
A 		2.2
(-3)
A 		14.1
(-1.8)
A 		24.2
(-0.8)
A 		40.6
(0.9)
P 		61.7
(3)
P 		60
C 17
(-3)
A 		20.2
(-2.6)
A 		25.5
(-1.9)
A 		33.1
(-0.8)
A 		41.7
(0.3)
A 		61.9
(3)
P 		45
avr 14.6
(-2.4) 		9.9
(-3) 		19.3
(-1.8) 		23
(-1.4) 		49.3
(1.8) 		58.7
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.5
(3)
A 		0.6
(-3)
A 		7.3
(-0.1)
A 		6.9
(-0.3)
A 		14
B 5.7
(0.9)
A 		1.5
(-3)
A 		5.1
(0.4)
A 		7.9
(3)
P 		6
C 7.2
(3)
A 		4.2
(-1.1)
A 		3.2
(-2.5)
A 		2.8
(-3)
A 		4
avr 9.1
(3) 		2.1
(-3) 		5.2
(-0.3) 		5.9
(0.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 4.2
(-2.4)
A 		2.6
(-3)
A 		4
(-2.5)
A 		3
(-2.9)
A 		19.8
(3)
P 		12.8
(0.6)
P 		17
B 1.4
(-2.8)
A 		0.7
(-3)
A 		3.4
(-2.3)
A 		6.4
(-1.5)
A 		16.5
(1.3)
P 		23
(3)
P 		22
C 6.3
(-3)
A 		6.2
(-3)
A 		6.5
(-2.9)
A 		6.6
(-2.8)
A 		13.5
(0)
A 		20.7
(3)
P 		15
avr 4
(-2.7) 		3.2
(-3) 		4.6
(-2.5) 		5.3
(-2.2) 		16.6
(2.2) 		18.8
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20715
Sequence Type Exemplar sequence
Representative Public ID C56917 NCBI
Target Description C56917_rc /REP_DB=TREMBL Accession /GB=C56917 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56917
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56917 C56917_rc /REP_DB=TREMBL Accession /GB=C56917 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307f11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063204 11/11 Negative Strand Matching Probes A 
SNAP00000013711 11/11 Negative Strand Matching Probes None
GENEFINDER00000013719 11/11 Negative Strand Matching Probes None
F18A1.7.1 11/11 Negative Strand Matching Probes None
F18A1.7.2 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7663213-7663493(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174517_AT
gacagggttgagacacgactccattcgctcaaacagaacgtgctttgtggcacacatata
ttcaacactgctgctggcttttgcgaagagcttgttgtgatcacagtactgttctttctt
cagacaagtgatagcctgtgcatgatgaccacagactttgcgagcttgatgtacaacatt
cttcatgttccacagagacgtcgtagaattgatgaacgggtcgatgcactttcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGGGTTGAGACACGACTCCATT 107 369 20 Antisense
GACTCCATTCGCTCAAACAGAACGT 167 373 36 Antisense
AGAACGTGCTTTGTGGCACACATAT 644 73 54 Antisense
ATATATTCAACACTGCTGCTGGCTT 520 19 75 Antisense
GCTGCTGGCTTTTGCGAAGAGCTTG 344 297 89 Antisense
ATCACAGTACTGTTCTTTCTTCAGA 12 29 119 Antisense
GTGATAGCCTGTGCATGATGACCAC 593 481 147 Antisense
ATGACCACAGACTTTGCGAGCTTGA 631 43 164 Antisense
GCGAGCTTGATGTACAACATTCTTC 642 289 179 Antisense
TCATGTTCCACAGAGACGTCGTAGA 339 623 202 Antisense
ATGAACGGGTCGATGCACTTTCGCA 339 43 231 Antisense
Sequence Source Affymetrix Proprietary Database