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[174516_at]

Description C55456_rc /REP_DB=TREMBL Accession /GB=C55456 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204d12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 21      6grp_total > 24      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 33      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1734
1 2 3 4 range
A 2252.3
(3)
P 		1349.1
(-0.4)
P 		902
(-2.1)
P 		654.9
(-3)
P 		1597
B 2367.9
(3)
P 		1099.5
(-1.6)
P 		1026.6
(-1.8)
P 		705.3
(-3)
P 		1663
C 2158
(3)
P 		1008.4
(-1.5)
P 		1164.3
(-0.9)
P 		634.2
(-3)
P 		1524
avr 2259.4
(3) 		1152.3
(-1.2) 		1031
(-1.6) 		664.8
(-3) 		1595

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1314
1 2 3 4 5 6 range
A 1207.9
(1)
P 		1485
(3)
P 		1357
(2.1)
P 		993.5
(-0.6)
P 		1024.6
(-0.3)
P 		657.3
(-3)
P 		828
B 1971.1
(3)
P 		1869.5
(2.5)
P 		1689
(1.5)
P 		1193.4
(-1.1)
P 		835.5
(-3)
P 		1171.8
(-1.2)
P 		1136
C 1696.6
(1.9)
P 		1914.5
(3)
P 		1381.1
(0.4)
P 		981.9
(-1.5)
P 		944.5
(-1.7)
P 		678.7
(-3)
P 		1236
avr 1625.2
(2.1) 		1756.3
(3) 		1475.7
(1.2) 		1056.3
(-1.6) 		934.9
(-2.4) 		835.9
(-3) 		920
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 724
1 2 3 4 range
A 820.1
(3)
P 		292.9
(-1.4)
P 		235.8
(-1.8)
P 		95.9
(-3)
P 		724
B 755.1
(3)
P 		271.5
(-1.8)
P 		237.9
(-2.1)
P 		150.3
(-3)
P 		605
C 714.4
(3)
P 		289.9
(-1.2)
P 		405.8
(-0)
P 		106.9
(-3)
P 		608
avr 763.2
(3) 		284.8
(-1.4) 		293.2
(-1.4) 		117.7
(-3) 		646

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 222.7
(-2)
P 		528.2
(3)
P 		295.5
(-0.8)
P 		252
(-1.5)
P 		309.2
(-0.6)
P 		160
(-3)
P 		368
B 685.8
(3)
P 		622.3
(2)
P 		410.1
(-1.5)
P 		316.1
(-3)
P 		339.4
(-2.6)
P 		437
(-1)
P 		370
C 628.9
(3)
P 		584.2
(2.4)
P 		351.5
(-0.9)
P 		197.5
(-3)
P 		305.6
(-1.5)
P 		227.2
(-2.6)
P 		431
avr 512.5
(1.8) 		578.2
(3) 		352.4
(-1.2) 		255.2
(-3) 		318.1
(-1.8) 		274.7
(-2.6) 		323
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22201
Sequence Type Exemplar sequence
Representative Public ID C55456 NCBI
Target Description C55456_rc /REP_DB=TREMBL Accession /GB=C55456 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204d12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029437(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029437 NCBI Caenorhabditis elegans UNCoordinated family member (unc-18) (unc-18) mRNA, complete cds. 11/11 None
F27D9.1c ENSEMBL cdna:known chromosome:CEL140:X:7682357:7686329:1 gene:F27D9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181030 3 1 NM_001029435 193527_at (11)
NM_001029437 174516_at (11), 193527_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7685610-7685912(+) 100.0 100.0
Public Domain and Genome References
Ensembl F27D9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAQ81273 Uncoordinated protein 18, isoform c [Caenorhabditis elegans] ref|NP_001024608.1| UNCoordinated family member (unc-18) [Caenorhabditis elegans] gb|AAB21818.1| putative acetylcholine regulator [Caenorhabditis elegans] 0.0
blast AAA93389 Uncoordinated protein 18, isoform a [Caenorhabditis elegans] ref|NP_001024606.1| UNCoordinated family member (unc-18) [Caenorhabditis elegans] gb|AAB28570.1| UNC-18 [Caenorhabditis elegans] sp|P34815|UNC18_CAEEL Putative acetylcholine regulator unc-18 (Uncoordinated protein 18) 0.0
blast CAE70259 Hypothetical protein CBG16760 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:174516_AT
gactatttgaataatgtgctcggctagatatagtatttatttttatctaatgattgtatc
ccccggtttgaaaaaaatttagtcataggctagtgtttctgtgttgctacgacttttatt
gttttttatcttgcttttaatctgaaaatgaggattcctcgttgcaataattccaaaaac
caaggattgtgatttgacgttgtgtttttgtctagtcaaaagagttgtgcatttcaaaaa
catt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATTTGAATAATGTGCTCGGCT 193 371 32 Antisense
AATGTGCTCGGCTAGATATAGTATT 222 163 44 Antisense
TATCTAATGATTGTATCCCCCGGTT 34 655 75 Antisense
AGTCATAGGCTAGTGTTTCTGTGTT 554 61 112 Antisense
GTTTCTGTGTTGCTACGACTTTTAT 181 451 126 Antisense
TGTTGCTACGACTTTTATTGTTTTT 143 563 133 Antisense
GTTTTTTATCTTGCTTTTAATCTGA 177 449 152 Antisense
GAGGATTCCTCGTTGCAATAATTCC 548 403 181 Antisense
AAGGATTGTGATTTGACGTTGTGTT 154 159 213 Antisense
GACGTTGTGTTTTTGTCTAGTCAAA 196 367 227 Antisense
AAGAGTTGTGCATTTCAAAAACATT 14 153 251 Antisense
Sequence Source Affymetrix Proprietary Database