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[174515_at]

Description C55998_rc /REP_DB=TREMBL Accession /GB=C55998 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232f11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 36      6grp_total > 55      4grp_total > 05      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 187.4
(-0.3)
M 		172.5
(-3)
P 		181.6
(-1.4)
A 		206
(3)
A 		34
B 157.1
(3)
A 		129.6
(-3)
P 		142.8
(-0.1)
P 		148.2
(1.1)
A 		28
C 166.7
(-1.3)
M 		113.3
(-3)
A 		122
(-2.7)
M 		305.9
(3)
P 		193
avr 170.4
(-0.7) 		138.5
(-3) 		148.8
(-2.2) 		220
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 176
1 2 3 4 5 6 range
A 195.8
(-1.5)
M 		204.1
(-1)
M 		265.1
(2.6)
P 		171.4
(-3)
P 		270.2
(2.9)
P 		271.4
(3)
M 		100
B 284.6
(3)
P 		224.2
(-1.5)
P 		278.8
(2.6)
P 		204.6
(-3)
P 		204.7
(-3)
A 		265.9
(1.6)
P 		80
C 203.8
(0.1)
P 		289.4
(3)
P 		227.4
(0.9)
P 		113.4
(-3)
P 		183.5
(-0.6)
P 		229.8
(1)
P 		176
avr 228.1
(1.1) 		239.2
(1.9) 		257.1
(3) 		163.1
(-3) 		219.5
(0.6) 		255.7
(2.9) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 68.2
(3)
M 		37.5
(-1.8)
P 		47.5
(-0.3)
A 		30.2
(-3)
A 		38
B 50.1
(3)
A 		32
(-2.9)
P 		33.1
(-2.5)
P 		31.6
(-3)
A 		19
C 55.2
(3)
M 		32.6
(-3)
A 		42.5
(-0.4)
M 		51.6
(2)
P 		23
avr 57.8
(3) 		34
(-3) 		41
(-1.2) 		37.8
(-2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 36.1
(-3)
M 		72.6
(1.8)
M 		57.7
(-0.1)
P 		43.5
(-2)
P 		81.5
(3)
P 		66.1
(1)
M 		45
B 99
(3)
P 		74.6
(-0.3)
P 		67.7
(-1.2)
P 		54.2
(-3)
P 		83.2
(0.9)
A 		99.2
(3)
P 		45
C 75.5
(1.8)
P 		88.3
(3)
P 		57.9
(0.2)
P 		22.8
(-3)
P 		59.4
(0.4)
P 		76.9
(2)
P 		66
avr 70.2
(1.4) 		78.5
(2.7) 		61.1
(0.1) 		40.2
(-3) 		74.7
(2.1) 		80.7
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20172
Sequence Type Exemplar sequence
Representative Public ID C55998 NCBI
Target Description C55998_rc /REP_DB=TREMBL Accession /GB=C55998 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55998
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55998 C55998_rc /REP_DB=TREMBL Accession /GB=C55998 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk232f11 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11624343-11624649(+) 91.83 100.0
chrI:11634834-11635140(-) 91.83 100.0
Sequence
Target Sequence 
>C. ELEGANS:174515_AT
taatttttctgtacattttacatgtaataatctccggagattttcaaattttacctcctc
gccagaatcttccagaaaaagctccttccgtgtcgatttacgcggcacctctcgtgaact
ctgcgaggagaagatttcaattttttgtcctcggggagtacacacgagcctggaagcttc
ttcttcttcttcttctttttcccagctccccctctccaagtgataaatatcaatacacaa
ataattggtgcctacagatttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTTTTCTGTACATTTTACATGT 433 635 26 Antisense
TTTACATGTAATAATCTCCGGAGAT 460 671 42 Antisense
TCCTCGCCAGAATCTTCCAGAAAAA 564 593 81 Antisense
AATCTTCCAGAAAAAGCTCCTTCCG 256 171 91 Antisense
CACCTCTCGTGAACTCTGCGAGGAG 635 201 131 Antisense
GAACTCTGCGAGGAGAAGATTTCAA 404 349 141 Antisense
GGAGTACACACGAGCCTGGAAGCTT 494 517 180 Antisense
ACACGAGCCTGGAAGCTTCTTCTTC 663 109 187 Antisense
CTCCCCCTCTCCAAGTGATAAATAT 216 235 231 Antisense
CCCCCTCTCCAAGTGATAAATATCA 140 261 233 Antisense
AAATAATTGGTGCCTACAGATTTCT 449 115 264 Antisense
Sequence Source Affymetrix Proprietary Database