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[174514_at]

Description CEC7193_rc /REP_DB=TREMBL Accession /GB=C10719 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk152a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 39      4grp_highest_8_8 > 46      4grp_high_8_8 > 10      6grp_highest_nonorm > 0      6grp_total > 28      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1938
1 2 3 4 range
A 1933.5
(2.3)
P 		698.5
(-2.5)
P 		580.5
(-3)
P 		2110.3
(3)
P 		1530
B 1831.9
(1)
P 		838
(-2.1)
P 		552.4
(-3)
P 		2490.2
(3)
P 		1938
C 1835.9
(2.6)
P 		946.4
(-1.5)
P 		629.9
(-3)
P 		1918.2
(3)
P 		1288
avr 1867.1
(1.8) 		827.6
(-2.1) 		587.6
(-3) 		2172.9
(3) 		1585

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1518
1 2 3 4 5 6 range
A 1885.9
(3)
P 		1563.7
(0.2)
P 		1216.5
(-2.9)
P 		1205.8
(-3)
P 		1871.4
(2.9)
P 		1549
(0)
P 		680
B 2465.6
(3)
P 		1558.1
(-1.8)
P 		1334.2
(-3)
P 		1410.9
(-2.6)
P 		1884.6
(-0.1)
P 		1903.3
(0)
P 		1131
C 2723.7
(3)
P 		1590.6
(-1.9)
P 		1323.8
(-3)
P 		1359.6
(-2.8)
P 		1773.1
(-1.1)
P 		1600.4
(-1.8)
P 		1400
avr 2358.4
(3) 		1570.8
(-1.4) 		1291.5
(-3) 		1325.4
(-2.8) 		1843
(0.1) 		1684.2
(-0.8) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 704
(3)
P 		151.6
(-3)
P 		151.8
(-3)
P 		308.9
(-1.3)
P 		552
B 584.2
(3)
P 		207
(-2)
P 		128
(-3)
P 		530.7
(2.3)
P 		456
C 607.7
(3)
P 		272.1
(-2.2)
P 		219.6
(-3)
P 		323.4
(-1.4)
P 		388
avr 632
(3) 		210.2
(-2.4) 		166.5
(-3) 		387.7
(-0.1) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 347.7
(-1.3)
P 		556.1
(2.8)
P 		264.9
(-3)
P 		305.8
(-2.2)
P 		564.7
(3)
P 		377.1
(-0.8)
P 		300
B 857.9
(3)
P 		518.6
(-0.8)
P 		324
(-3)
P 		373.7
(-2.4)
P 		765.7
(2)
P 		709.7
(1.3)
P 		534
C 1009.5
(3)
P 		485.3
(-1.3)
P 		336.9
(-2.5)
P 		273.4
(-3)
P 		573.7
(-0.6)
P 		535.8
(-0.9)
P 		736
avr 738.4
(3) 		520
(-0) 		308.6
(-3) 		317.6
(-2.9) 		634.7
(1.6) 		540.9
(0.2) 		430
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21772
Sequence Type Exemplar sequence
Representative Public ID CEC7193 NCBI
Target Description CEC7193_rc /REP_DB=TREMBL Accession /GB=C10719 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk152a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028685 NCBI Caenorhabditis elegans F26F12.3c (F26F12.3) mRNA, complete cds. 11/11 None
F26F12.3c.1 ENSEMBL cdna:known chromosome:CEL140:V:5841563:5845324:-1 gene:F26F12.3 11/11 None
F26F12.3c.2 ENSEMBL cdna:known chromosome:CEL140:V:5841564:5848313:-1 gene:F26F12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178972 3 1 NM_001028685 173086_s_at (11), 174514_at (11), 175083_s_at (11)
NM_072126 175083_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5841574-5842086(-) 100.0 100.0
Public Domain and Genome References
Ensembl F26F12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023856 F26F12.3c [Caenorhabditis elegans] gb|AAV58870.1| Hypothetical protein F26F12.3c [Caenorhabditis elegans] 0.0
blast NP_504528 F26F12.3b [Caenorhabditis elegans] gb|AAD34666.1| Hypothetical protein F26F12.3b [Caenorhabditis elegans] 0.0
blast NP_504527 F26F12.3a [Caenorhabditis elegans] gb|AAC25890.2| Hypothetical protein F26F12.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174514_AT
gtatctattcacttttcatgttcatatattttctttttcatcttccttttttcgccttct
gaatttctgctgaaaattcaaaaaccaatcttccatatgtgctggatcacgtatttcctt
tctcctataggaattggccaattttcatttaattctaggttttccctttttaggccccta
atttctaatttccatcacctcctccatcaagaacgcaggcgttcaattcgttcaatcccg
aaaaatttgcttgcgaagctgcaaaaatttgtgaaaattgcaacaaaaaaatccacaaaa
cccaactaatcgtttgtctcaaaagtgtcacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCTATTCACTTTTCATGTTCAT 154 455 17 Antisense
TTTTCGCCTTCTGAATTTCTGCTGA 288 675 65 Antisense
AAAAACCAATCTTCCATATGTGCTG 682 129 96 Antisense
GTGCTGGATCACGTATTTCCTTTCT 411 479 115 Antisense
CACGTATTTCCTTTCTCCTATAGGA 567 199 124 Antisense
TAGGCCCCTAATTTCTAATTTCCAT 342 651 187 Antisense
CCTCCTCCATCAAGAACGCAGGCGT 494 267 214 Antisense
AGGCGTTCAATTCGTTCAATCCCGA 618 51 233 Antisense
ATCCCGAAAAATTTGCTTGCGAAGC 426 37 251 Antisense
TCCACAAAACCCAACTAATCGTTTG 662 583 308 Antisense
ATCGTTTGTCTCAAAAGTGTCACAT 470 35 325 Antisense
Sequence Source Affymetrix Proprietary Database