[Home] | [Total List]

[174513_at]

Description CEK003F5R_rc /REP_DB=TREMBL Accession /GB=D27784 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3f5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 22      6grp_total > 03      4grp_total > 61      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1080
1 2 3 4 range
A 1761.2
(3)
P 		1059.6
(-0.9)
P 		1376.7
(0.9)
P 		680.8
(-3)
P 		1080
B 1580.3
(2.7)
P 		1615.7
(3)
P 		1521.9
(2.3)
P 		846.6
(-3)
P 		769
C 1640.6
(2.9)
P 		1659
(3)
P 		1388.1
(1.1)
P 		789.1
(-3)
P 		870
avr 1660.7
(3) 		1444.8
(1.5) 		1428.9
(1.4) 		772.2
(-3) 		889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1131
1 2 3 4 5 6 range
A 1733.2
(1.4)
P 		2028.4
(3)
P 		1334
(-0.7)
P 		1166.8
(-1.6)
P 		1444.3
(-0.1)
P 		897.8
(-3)
P 		1131
B 1883.1
(3)
P 		1748.5
(2.2)
P 		903.9
(-3)
P 		1809.9
(2.6)
P 		1366
(-0.2)
P 		902.3
(-3)
P 		981
C 1617
(1.9)
P 		1769.3
(3)
P 		1646.7
(2.1)
P 		1358.8
(0.1)
P 		1194.1
(-1.1)
P 		927.8
(-3)
P 		842
avr 1744.4
(2.3) 		1848.7
(3) 		1294.9
(-0.5) 		1445.2
(0.4) 		1334.8
(-0.3) 		909.3
(-3) 		939
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 542
1 2 3 4 range
A 641.2
(3)
P 		230
(-1.6)
P 		359.9
(-0.1)
P 		99.7
(-3)
P 		542
B 503.9
(3)
P 		399
(1.1)
P 		352.7
(0.2)
P 		180.4
(-3)
P 		324
C 543.1
(3)
P 		477
(2)
P 		483.8
(2.1)
P 		133.1
(-3)
P 		410
avr 562.7
(3) 		368.7
(0.3) 		398.8
(0.7) 		137.7
(-3) 		425

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 503
1 2 3 4 5 6 range
A 319.5
(-1.8)
P 		721.4
(3)
P 		290.5
(-2.1)
P 		295.9
(-2.1)
P 		435.8
(-0.4)
P 		218.6
(-3)
P 		503
B 655.2
(3)
P 		582
(2)
P 		219.5
(-3)
P 		479.4
(0.6)
P 		555
(1.6)
P 		336.5
(-1.4)
P 		436
C 599.3
(3)
P 		539.9
(1.9)
P 		419.1
(-0.3)
P 		273.3
(-3)
P 		386.4
(-0.9)
P 		310.6
(-2.3)
P 		326
avr 524.7
(1.3) 		614.4
(3) 		309.7
(-2.6) 		349.5
(-1.9) 		459.1
(0.1) 		288.6
(-3) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21878
Sequence Type Exemplar sequence
Representative Public ID CEK003F5R NCBI
Target Description CEK003F5R_rc /REP_DB=TREMBL Accession /GB=D27784 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3f5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F32F2.1 ENSEMBL cdna:known chromosome:CEL140:V:13275767:13286577:-1 gene:F32F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13275776-13276119(-) 98.83 100.0
Public Domain and Genome References
Ensembl F32F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18349 Hypothetical protein F32F2.1 [Caenorhabditis elegans] ref|NP_506293.1| F32F2.1 [Caenorhabditis elegans] 0.0
blast CAE64641 Hypothetical protein CBG09405 [Caenorhabditis briggsae] 0.0
blast XP_604128 PREDICTED: similar to Pleckstrin homology domain containing family G member 1 [Bos taurus] 2.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR000219 EMBL-EBI DH domain 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:174513_AT
ccgaaccttctttcacatgtgatgaccccccaaaattttcctcttgtctcaattatctct
taaattgcgcccatactataatgttccataacaaaccgttttctgttcgcactttacact
taccggtgttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGAACCTTCTTTCACATGTGATGA 567 263 173 Antisense
CCTTCTTTCACATGTGATGACCCCC 529 267 178 Antisense
CCAAAATTTTCCTCTTGTCTCAATT 308 275 202 Antisense
ATTTTCCTCTTGTCTCAATTATCTC 222 15 207 Antisense
TCCTCTTGTCTCAATTATCTCTTAA 437 593 211 Antisense
TTATCTCTTAAATTGCGCCCATACT 269 679 225 Antisense
CTTAAATTGCGCCCATACTATAATG 704 221 231 Antisense
GCCCATACTATAATGTTCCATAACA 386 287 241 Antisense
TAACAAACCGTTTTCTGTTCGCACT 251 639 261 Antisense
TTTTCTGTTCGCACTTTACACTTAC 295 677 271 Antisense
TCGCACTTTACACTTACCGGTGTTT 491 597 279 Antisense
Sequence Source Affymetrix Proprietary Database