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[174510_at]

Description C52516_rc /REP_DB=TREMBL Accession /GB=C52516 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk260a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 16      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 01      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3005
1 2 3 4 range
A 4318.5
(3)
P 		1724.7
(-2.2)
P 		1323.9
(-3)
P 		1696.4
(-2.3)
P 		2995
B 3989.8
(3)
P 		1918.3
(-1.6)
P 		1313.2
(-3)
P 		3072.2
(0.9)
P 		2677
C 3707.7
(3)
P 		1997
(-1.4)
P 		1387.6
(-3)
P 		2196.4
(-0.9)
P 		2320
avr 4005.3
(3) 		1880
(-1.8) 		1341.6
(-3) 		2321.7
(-0.8) 		2664

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2426
1 2 3 4 5 6 range
A 2917.2
(3)
P 		2783.5
(2.6)
P 		1163.8
(-2.7)
P 		1066.9
(-3)
P 		1071.4
(-3)
P 		1133.7
(-2.8)
P 		1850
B 3345.1
(3)
P 		2227.9
(0.2)
P 		1508.1
(-1.6)
P 		1453.9
(-1.7)
P 		924.3
(-3)
P 		1128.3
(-2.5)
P 		2421
C 3110.5
(3)
P 		2365.2
(1)
P 		1748.6
(-0.7)
P 		1229.6
(-2.2)
P 		919.5
(-3)
P 		1011.6
(-2.7)
P 		2191
avr 3124.3
(3) 		2458.9
(1.1) 		1473.5
(-1.6) 		1250.1
(-2.2) 		971.7
(-3) 		1091.2
(-2.7) 		2153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1324
1 2 3 4 range
A 1572.4
(3)
P 		374.4
(-2.4)
P 		346.1
(-2.6)
P 		248.3
(-3)
P 		1324
B 1272.3
(3)
P 		473.8
(-1.9)
P 		304.3
(-3)
P 		654.7
(-0.8)
P 		968
C 1227.4
(3)
P 		574.2
(-1.6)
P 		483.6
(-2.2)
P 		370.4
(-3)
P 		857
avr 1357.4
(3) 		474.1
(-2.4) 		378
(-3) 		424.5
(-2.7) 		979

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 917
1 2 3 4 5 6 range
A 537.8
(-0.7)
P 		989.9
(3)
P 		253.5
(-3)
P 		270.6
(-2.9)
P 		323.3
(-2.4)
P 		276
(-2.8)
P 		736
B 1163.9
(3)
P 		741.6
(-0.2)
P 		366.2
(-3)
P 		385.1
(-2.9)
P 		375.5
(-2.9)
P 		420.7
(-2.6)
P 		798
C 1152.9
(3)
P 		721.7
(0.1)
P 		445
(-1.7)
P 		247.3
(-3)
P 		297.5
(-2.7)
P 		338.6
(-2.4)
P 		906
avr 951.5
(3) 		817.7
(1.8) 		354.9
(-2.5) 		301
(-3) 		332.1
(-2.7) 		345.1
(-2.6) 		651
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22147
Sequence Type Exemplar sequence
Representative Public ID C52516 NCBI
Target Description C52516_rc /REP_DB=TREMBL Accession /GB=C52516 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk260a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C52516
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C52516 C52516_rc /REP_DB=TREMBL Accession /GB=C52516 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk260a11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11485432-11485712(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174510_AT
ccccaacttcctctcattattgaagtttctcatgtattctacctcatttattattgtttt
tttttgttcaaaatgtcaatgtgacaaaacaaattgcccgtaatgtctgaaactctgttc
tttcctatgtaactgtatacgaaaaattcccccgttaatttttaatatgtattctgtgtc
ccatctttgccccagtttattttttgtacccctgtgagcgttcaaattacctcagcatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCCAACTTCCTCTCATTATTGAAG 508 261 20 Antisense
TTCCTCTCATTATTGAAGTTTCTCA 571 697 27 Antisense
AAGTTTCTCATGTATTCTACCTCAT 428 157 42 Antisense
GTATTCTACCTCATTTATTATTGTT 484 451 53 Antisense
GTGACAAAACAAATTGCCCGTAATG 165 481 100 Antisense
GCCCGTAATGTCTGAAACTCTGTTC 257 285 115 Antisense
AACTCTGTTCTTTCCTATGTAACTG 243 141 130 Antisense
TTTAATATGTATTCTGTGTCCCATC 532 673 180 Antisense
CATCTTTGCCCCAGTTTATTTTTTG 604 211 201 Antisense
TTTTGTACCCCTGTGAGCGTTCAAA 584 677 221 Antisense
GAGCGTTCAAATTACCTCAGCATCC 201 387 235 Antisense
Sequence Source Affymetrix Proprietary Database