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[174509_s_at]

Description C56476_rc /REP_DB=TREMBL Accession /GB=C56476 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk262c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 57      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 84      6grp_total > 59      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1263
1 2 3 4 range
A 942.4
(-0.7)
P 		836.7
(-1.7)
P 		710.5
(-3)
P 		1306.6
(3)
P 		596
B 836.4
(-2.8)
P 		898.1
(-2.4)
P 		789.3
(-3)
P 		1965.6
(3)
P 		1176
C 941.1
(-1.3)
P 		732.6
(-2.8)
P 		702.4
(-3)
P 		1525.9
(3)
P 		824
avr 906.6
(-1.8) 		822.5
(-2.4) 		734.1
(-3) 		1599.4
(3) 		865

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 788.7
(3)
P 		378.6
(-3)
P 		503.9
(-1.2)
P 		462.8
(-1.8)
P 		658.4
(1.1)
P 		652.3
(1)
P 		410
B 630.8
(-0.8)
P 		475.7
(-2.9)
P 		648.7
(-0.5)
P 		471.4
(-3)
P 		562.7
(-1.7)
P 		903.8
(3)
P 		432
C 644.3
(-0.3)
P 		445.6
(-2.7)
P 		532.7
(-1.7)
P 		418.9
(-3)
P 		573.7
(-1.2)
P 		928.3
(3)
P 		509
avr 687.9
(0.9) 		433.3
(-3) 		561.8
(-1) 		451
(-2.7) 		598.3
(-0.5) 		828.1
(3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 343.1
(3)
P 		181.6
(-3)
P 		185.7
(-2.8)
P 		191.3
(-2.6)
P 		162
B 266.7
(-0.9)
P 		221.8
(-2)
P 		182.9
(-3)
P 		418.9
(3)
P 		236
C 311.5
(3)
P 		210.6
(-3)
P 		244.8
(-1)
P 		257.3
(-0.2)
P 		101
avr 307.1
(3) 		204.7
(-3) 		204.5
(-3) 		289.2
(2) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 253
1 2 3 4 5 6 range
A 145.4
(-0.6)
P 		134.6
(-1.3)
P 		109.7
(-3)
P 		117.4
(-2.5)
P 		198.7
(3)
P 		158.8
(0.3)
P 		89
B 219.5
(-0.3)
P 		158.4
(-2.1)
P 		157.5
(-2.1)
P 		124.9
(-3)
P 		228.6
(-0.1)
P 		337
(3)
P 		212
C 238.8
(1.1)
P 		136
(-1.6)
P 		135.6
(-1.6)
P 		84.2
(-3)
P 		185.6
(-0.3)
P 		310.8
(3)
P 		227
avr 201.2
(0.5) 		143
(-1.7) 		134.3
(-2) 		108.8
(-3) 		204.3
(0.6) 		268.9
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174509_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20543
Sequence Type Exemplar sequence
Representative Public ID C56476 NCBI
Target Description C56476_rc /REP_DB=TREMBL Accession /GB=C56476 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk262c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064164(11), NM_064165(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064164 NCBI Caenorhabditis elegans Y17G7B.10a (Y17G7B.10) mRNA, complete cds. 11/11 A 
NM_064165 NCBI Caenorhabditis elegans Y17G7B.10b (Y17G7B.10) mRNA, complete cds. 11/11 A 
SNAP00000030324 ENSEMBL cdna:SNAP chromosome:CEL140:II:12054369:12060943:1 10/11 None
GENEFINDER00000030397 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12042885:12060067:1 10/11 None
Y17G7B.10a.1 ENSEMBL cdna:known chromosome:CEL140:II:12049480:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.6 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.4 ENSEMBL cdna:known chromosome:CEL140:II:12049486:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.1 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059757:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.5 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.3 ENSEMBL cdna:known chromosome:CEL140:II:12054216:12059673:1 gene:Y17G7B.10 11/11 None
Y17G7B.10b.2 ENSEMBL cdna:known chromosome:CEL140:II:12054238:12059753:1 gene:Y17G7B.10 11/11 None
Y17G7B.10a.2 ENSEMBL cdna:known chromosome:CEL140:II:12054386:12059673:1 gene:Y17G7B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12059412-12059692(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y17G7B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19456 Hypothetical protein Y17G7B.10b [Caenorhabditis elegans] ref|NP_496566.1| Y17G7B.10b [Caenorhabditis elegans] 0.0
blast CAA19455 Hypothetical protein Y17G7B.10a [Caenorhabditis elegans] ref|NP_496565.2| Y17G7B.10a [Caenorhabditis elegans] 0.0
blast CAE73550 Hypothetical protein CBG21019 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 9.7E-85
Pfam IPR009286 EMBL-EBI Protein of unknown function DUF941 5.3E-116
Sequence
Target Sequence 
>C. ELEGANS:174509_S_AT
cgatccacggggattcgccgataaaatttgcatcaagagccgcggttacgatgctcattt
ggtcattgacggaggcatctcgtatcgatttaacgatggatccgaggcggtgatggaggt
tcgggatgaggatacgttgcgtacggttgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATCCACGGGGATTCGCCGATAAA 578 187 111 Antisense
GGGATTCGCCGATAAAATTTGCATC 552 495 120 Antisense
AATTTGCATCAAGAGCCGCGGTTAC 197 175 135 Antisense
AGAGCCGCGGTTACGATGCTCATTT 162 71 146 Antisense
ACGATGCTCATTTGGTCATTGACGG 411 91 158 Antisense
GTCATTGACGGAGGCATCTCGTATC 536 467 172 Antisense
GGAGGCATCTCGTATCGATTTAACG 491 515 181 Antisense
TTTAACGATGGATCCGAGGCGGTGA 419 665 199 Antisense
GAGGCGGTGATGGAGGTTCGGGATG 630 405 214 Antisense
TGGAGGTTCGGGATGAGGATACGTT 120 547 224 Antisense
GAGGATACGTTGCGTACGGTTGTAT 612 401 238 Antisense
Sequence Source Affymetrix Proprietary Database