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[174508_s_at]

Description CEK006E5R_rc /REP_DB=TREMBL Accession /GB=D27954 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      6grp_highest_nonorm > 62      6grp_total > 10      4grp_total > 49      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1946
1 2 3 4 range
A 72.4
(-2.8)
A 		1955.9
(3)
P 		1501.3
(1.6)
P 		14.6
(-3)
A 		1941
B 9.9
(-3)
A 		1742.5
(3)
P 		1461.7
(2)
P 		54.4
(-2.8)
A 		1733
C 44.1
(-3)
A 		1612.5
(3)
P 		1433.4
(2.3)
P 		54.3
(-3)
A 		1568
avr 42.1
(-3) 		1770.3
(3) 		1465.5
(1.9) 		41.1
(-3) 		1729

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1229
1 2 3 4 5 6 range
A 162.7
(-3)
P 		1363.6
(3)
P 		565.7
(-1)
P 		430.6
(-1.7)
P 		420.7
(-1.7)
P 		211.4
(-2.8)
P 		1201
B 134.8
(-3)
P 		1009
(3)
P 		793
(1.5)
P 		450.8
(-0.8)
P 		355.3
(-1.5)
P 		204.4
(-2.5)
P 		874
C 145.9
(-3)
P 		901.9
(3)
P 		727.1
(1.6)
P 		340.4
(-1.5)
P 		413
(-0.9)
P 		220.5
(-2.4)
P 		756
avr 147.8
(-3) 		1091.5
(3) 		695.3
(0.5) 		407.3
(-1.4) 		396.3
(-1.4) 		212.1
(-2.6) 		944
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 498
1 2 3 4 range
A 26.4
(-2.7)
A 		424.6
(3)
P 		392.5
(2.5)
P 		2.1
(-3)
A 		423
B 3.2
(-3)
A 		430.4
(3)
P 		338.7
(1.7)
P 		11.6
(-2.9)
A 		427
C 14.6
(-2.9)
A 		463.6
(2.6)
P 		499.6
(3)
P 		9.2
(-3)
A 		490
avr 14.7
(-2.9) 		439.5
(3) 		410.3
(2.6) 		7.6
(-3) 		432

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 455
1 2 3 4 5 6 range
A 30
(-3)
P 		484.9
(3)
P 		123.2
(-1.8)
P 		109.2
(-2)
P 		127
(-1.7)
P 		51.5
(-2.7)
P 		455
B 46.9
(-3)
P 		335.9
(3)
P 		192.6
(0)
P 		119.4
(-1.5)
P 		144.4
(-1)
P 		76.2
(-2.4)
P 		289
C 54.1
(-3)
P 		275.2
(3)
P 		185.1
(0.6)
P 		68.5
(-2.6)
P 		133.6
(-0.8)
P 		73.8
(-2.5)
P 		221
avr 43.7
(-3) 		365.3
(3) 		167
(-0.7) 		99
(-2) 		135
(-1.3) 		67.2
(-2.6) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21270
Sequence Type Exemplar sequence
Representative Public ID CEK006E5R NCBI
Target Description CEK006E5R_rc /REP_DB=TREMBL Accession /GB=D27954 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6e5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070008 NCBI Caenorhabditis elegans K08E7.5 (K08E7.5) mRNA, complete cds. 11/11 A 
SNAP00000042646 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12573351:12578718:1 11/11 None
GENEFINDER00000042653 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12573351:12578718:1 11/11 None
K08E7.5 ENSEMBL cdna:known chromosome:CEL140:IV:12573366:12578816:1 gene:K08E7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12578050-12578826(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08E7.5
Entrez Gene 178211 Entrez gene
SwissProt Q21344 EMBL-EBI
WormBase CE11924 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01228 Hypothetical protein K08E7.5 [Caenorhabditis elegans] ref|NP_502409.1| K08E7.5 [Caenorhabditis elegans] 0.0
blast CAE67913 Hypothetical protein CBG13510 [Caenorhabditis briggsae] 7.0E-95
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 3.0E-24
blast AAZ14281 proteophosphoglycan 5 [Leishmania major strain Friedlin] ref|XP_843163.1| proteophosphoglycan 5 [Leishmania major] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:174508_S_AT
tcttccatgcctgggtcgtaagaaacgcagtaccctatcacaatcgggatgttctcaatg
taatagtatgggtcatttgttcaatcgctacaagaggagtctatttggaggatgttcgcc
gtgtgcaccacagcaaccctgcggatgtggccgtaagaagcgatcggtcaccatgaagct
cgtcaagagagctccgatgcagtgtgactccacatgttgcgacttttcaagatgtccata
tcgccagaagaaagaagcgctggtgccgtttatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCCATGCCTGGGTCGTAAGAAA 272 617 64 Antisense
AAGAAACGCAGTACCCTATCACAAT 573 151 83 Antisense
ACCCTATCACAATCGGGATGTTCTC 323 91 95 Antisense
ATGGGTCATTTGTTCAATCGCTACA 624 49 131 Antisense
ATTTGGAGGATGTTCGCCGTGTGCA 604 17 166 Antisense
CAACCCTGCGGATGTGGCCGTAAGA 486 183 197 Antisense
AGCGATCGGTCACCATGAAGCTCGT 7 81 222 Antisense
GAGAGCTCCGATGCAGTGTGACTCC 258 395 250 Antisense
TGACTCCACATGTTGCGACTTTTCA 218 569 268 Antisense
TTTCAAGATGTCCATATCGCCAGAA 699 671 288 Antisense
AAGAAGCGCTGGTGCCGTTTATGTA 297 153 315 Antisense
Sequence Source Affymetrix Proprietary Database