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[174507_at] regulator of chromosome condensation

Description CEK006F9R_rc /REP_DB=TREMBL Accession /GB=D27966 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 26      4grp_high_8_8 > 60      6grp_highest_nonorm > 87      6grp_total > 69      4grp_total > 60      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 804
1 2 3 4 range
A 1351.2
(0.8)
P 		1228.1
(-0.3)
P 		1604.3
(3)
P 		913.1
(-3)
P 		691
B 1223.3
(0.1)
P 		1331.5
(1.4)
P 		1472.6
(3)
P 		955.9
(-3)
P 		517
C 1344
(0.1)
P 		1365.8
(0.2)
P 		1717
(3)
P 		953.5
(-3)
P 		764
avr 1306.2
(0.3) 		1308.5
(0.4) 		1598
(3) 		940.8
(-3) 		657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 854
1 2 3 4 5 6 range
A 913.8
(-2.1)
P 		967.3
(-1.7)
P 		855.1
(-2.5)
P 		789
(-3)
P 		1389.5
(1.4)
P 		1609.1
(3)
P 		820
B 1401.4
(2.3)
P 		1150.2
(0.3)
P 		754.9
(-3)
P 		934.2
(-1.5)
P 		1199.9
(0.7)
P 		1480.3
(3)
P 		725
C 1266.5
(1.1)
P 		988.4
(-1.2)
P 		862.6
(-2.3)
P 		780.9
(-3)
P 		1313.4
(1.5)
P 		1484
(3)
P 		703
avr 1193.9
(0.2) 		1035.3
(-1.2) 		824.2
(-3) 		834.7
(-2.9) 		1300.9
(1.1) 		1524.5
(3) 		700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 465
1 2 3 4 range
A 492
(3)
P 		266.6
(-0.8)
P 		419.4
(1.8)
P 		133.7
(-3)
P 		358
B 390.1
(3)
P 		328.9
(1)
P 		341.2
(1.4)
P 		203.7
(-3)
P 		186
C 444.9
(0.9)
P 		392.7
(0.2)
P 		598.4
(3)
P 		160.8
(-3)
P 		438
avr 442.3
(2.8) 		329.4
(0.4) 		453
(3) 		166.1
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 395
1 2 3 4 5 6 range
A 168.5
(-3)
P 		344
(1.2)
P 		186.2
(-2.6)
P 		200.1
(-2.2)
P 		419.3
(3)
P 		391.8
(2.3)
P 		251
B 487.6
(2)
P 		382.8
(0.2)
P 		183.3
(-3)
P 		247.4
(-2)
P 		487.5
(2)
P 		552
(3)
P 		369
C 469.4
(2.5)
P 		301.6
(-0.4)
P 		219.5
(-1.9)
P 		157
(-3)
P 		425
(1.7)
P 		496.8
(3)
P 		340
avr 375.2
(0.8) 		342.8
(0.1) 		196.3
(-3) 		201.5
(-2.9) 		443.9
(2.2) 		480.2
(3) 		284
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20525
Sequence Type Exemplar sequence
Representative Public ID CEK006F9R NCBI
Target Description CEK006F9R_rc /REP_DB=TREMBL Accession /GB=D27966 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk6f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063352(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063352 NCBI Caenorhabditis elegans associated with RAN (nuclear import/export) function family member (ran-3) (ran-3) mRNA, complete cds. 11/11 None
C26D10.1 ENSEMBL cdna:known chromosome:CEL140:II:8322535:8324975:-1 gene:C26D10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8322552-8322932(-) 100.0 100.0
Public Domain and Genome References
Gene Title regulator of chromosome condensation
Gene Symbol ran-3
Ensembl C26D10.1
Entrez Gene 174332 Entrez gene
SwissProt Q18211 EMBL-EBI
WormBase CE03024 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602455_S_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
CANINE:1601662_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
CANINE:1596209_S_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
CANINE_2:CFA.10400.1.A1_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
CANINE_2:CFA.7465.1.A1_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
CANINE_2:CFAAFFX.18301.1.S1_S_AT similar to Regulator of chromosome condensation (Cell cycle regulatory protein) cfa
DROSOPHILA_2:1630166_S_AT Bj1 protein dm
DROSGENOME1:142683_S_AT Bj1 protein dm
HG-U133_PLUS_2:206499_S_AT regulator of chromosome condensation 1 hs
HG-U133A:206499_S_AT regulator of chromosome condensation 1 hs
HG-FOCUS:206499_S_AT regulator of chromosome condensation 1 hs
HG-U133A_2:206499_S_AT regulator of chromosome condensation 1 hs
HG-U95AV2:1196_AT regulator of chromosome condensation 1 hs
HC-G110:1196_AT regulator of chromosome condensation 1 hs
HUGENEFL:D00591_AT regulator of chromosome condensation 1 hs
U133_X3P:G4502800_3P_A_AT regulator of chromosome condensation 1 hs
U133_X3P:HS.84746.2.S1_3P_A_AT regulator of chromosome condensation 1 hs
HG-U133A_2:215747_S_AT regulator of chromosome condensation 1 hs
HG-U133_PLUS_2:215747_S_AT regulator of chromosome condensation 1 hs
HG-U133A:215747_S_AT regulator of chromosome condensation 1 hs
HG-U95AV2:37927_AT regulator of chromosome condensation 1 hs
MU11KSUBB:MSA.16680.0_S_AT regulator of chromosome condensation 1 mm
MU11KSUBB:MSA.15248.0_S_AT regulator of chromosome condensation 1 mm
MU11KSUBB:MSA.32376.0_S_AT regulator of chromosome condensation 1 mm
MU11KSUBB:MSA.22725.0_F_AT regulator of chromosome condensation 1 mm
MG-U74AV2:99138_AT regulator of chromosome condensation 1 mm
MG-U74BV2:162775_AT regulator of chromosome condensation 1 mm
MG-U74CV2:168725_I_AT regulator of chromosome condensation 1 mm
MOE430A:1416962_AT regulator of chromosome condensation 1 mm
MOUSE430A_2:1416962_AT regulator of chromosome condensation 1 mm
MOUSE430_2:1416962_AT regulator of chromosome condensation 1 mm
MU19KSUBA:TC16198_AT Regulator of chromosome condensation 1 (Rcc1), mRNA mm
MU19KSUBA:TC22176_AT Regulator of chromosome condensation 1 (Rcc1), mRNA mm
MU19KSUBB:TC34734_AT Regulator of chromosome condensation 1 (Rcc1), mRNA mm
YEAST_2:1778322_AT Nucleotide exchange factor for Gsp1p, localizes to the nucleus, required for nucleocytoplasmic trafficking of macromolecules; potentially phosphorylated by Cdc28p Sc
Protein Similarities
Method ID Description E-Value
blast CAA91119 Hypothetical protein C26D10.1 [Caenorhabditis elegans] ref|NP_495753.1| associated with RAN (nuclear import/export) function family member (ran-3) [Caenorhabditis elegans] sp|Q18211|RCC1_CAEEL Regulator of chromosome condensation (Cell cycle regulatory protein) (RCC1 homolog) 0.0
blast CAE57690 Hypothetical protein CBG00692 [Caenorhabditis briggsae] 0.0
blast P25183 Regulator of chromosome condensation dbj|BAA00586.1| RCC1 protein [Xenopus laevis] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:174507_AT
ttcgtttcccggtagccaattcgattgttctccagtaacattctcatcaatttttctgtt
ttttttatcatttcatttttgtcaagtagcatcagtcatgtaagaaagggatagagttcc
cttctgtgaaaatggagaattgttgaaacgtcgttgcacaacgacgtttaaacacttcac
tctatccctggattgatttccaacttctatgttttctcaaaaccccctattagttctgct
atatattggaatccaaaaatttttcatttttagcctgagttatgttgttctcttatcatg
tgaactcactgttttataatccgtttcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTTTCCCGGTAGCCAATTCGAT 158 659 33 Antisense
GCCAATTCGATTGTTCTCCAGTAAC 11 277 47 Antisense
GTTCTCCAGTAACATTCTCATCAAT 93 443 59 Antisense
GGATAGAGTTCCCTTCTGTGAAAAT 158 509 141 Antisense
GACGTTTAAACACTTCACTCTATCC 407 375 195 Antisense
CACTTCACTCTATCCCTGGATTGAT 298 197 205 Antisense
GGATTGATTTCCAACTTCTATGTTT 598 507 222 Antisense
TCTATGTTTTCTCAAAACCCCCTAT 103 613 238 Antisense
AAACCCCCTATTAGTTCTGCTATAT 45 127 252 Antisense
GAGTTATGTTGTTCTCTTATCATGT 649 397 309 Antisense
TCACTGTTTTATAATCCGTTTCACC 469 625 338 Antisense
Sequence Source Affymetrix Proprietary Database