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[174506_at] Zinc finger, C2H2 type (3 domains)

Description C37985_rc /REP_DB=TREMBL Accession /GB=C37985 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 50      6grp_total > 36      4grp_total > 39      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 815
1 2 3 4 range
A 1040.7
(3)
P 		275.6
(-2.6)
P 		226.2
(-3)
P 		391.1
(-1.8)
P 		815
B 655.5
(3)
P 		380.5
(-1.2)
P 		260.2
(-3)
P 		463.9
(0.1)
P 		395
C 914.7
(3)
P 		277.5
(-2.9)
P 		262.2
(-3)
P 		517.4
(-0.7)
P 		653
avr 870.3
(3) 		311.2
(-2.4) 		249.5
(-3) 		457.5
(-1) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 665.4
(3)
P 		474.4
(-0.2)
P 		463.7
(-0.4)
P 		304.8
(-3)
P 		361
(-2.1)
P 		466.1
(-0.3)
P 		361
B 567.3
(1.4)
P 		662.4
(3)
P 		462.7
(-0.3)
P 		358.1
(-2.1)
P 		303.5
(-3)
P 		545.3
(1)
P 		359
C 525.1
(2.1)
P 		572
(3)
P 		366.9
(-0.8)
P 		390.5
(-0.3)
P 		244.5
(-3)
P 		426.9
(0.3)
P 		328
avr 585.9
(3) 		569.6
(2.7) 		431.1
(-0.3) 		351.1
(-2) 		303
(-3) 		479.4
(0.7) 		283
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 378.9
(3)
P 		59.8
(-3)
P 		59.1
(-3)
P 		57.2
(-3)
P 		322
B 209
(3)
P 		94
(-1.6)
P 		60.3
(-3)
P 		98.9
(-1.4)
P 		149
C 302.8
(3)
P 		79.8
(-3)
P 		91.4
(-2.7)
P 		87.2
(-2.8)
P 		223
avr 296.9
(3) 		77.9
(-2.8) 		70.3
(-3) 		81.1
(-2.7) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 122.7
(-0)
P 		168.7
(3)
P 		101
(-1.4)
P 		77.3
(-3)
P 		108.9
(-0.9)
P 		113.5
(-0.6)
P 		91
B 197.4
(1.9)
P 		220.5
(3)
P 		112.4
(-2.2)
P 		94.9
(-3)
P 		123.3
(-1.6)
P 		203.3
(2.2)
P 		126
C 194.6
(3)
P 		174.5
(2)
P 		93.4
(-2.2)
P 		78.5
(-3)
P 		79.1
(-3)
P 		142.9
(0.3)
P 		116
avr 171.6
(2.1) 		187.9
(3) 		102.3
(-1.9) 		83.6
(-3) 		103.8
(-1.8) 		153.2
(1) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22322
Sequence Type Exemplar sequence
Representative Public ID C37985 NCBI
Target Description C37985_rc /REP_DB=TREMBL Accession /GB=C37985 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk484c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078061 NCBI Caenorhabditis elegans C27C12.2 (C27C12.2) mRNA, complete cds. 11/11 None
C27C12.2 ENSEMBL cdna:known chromosome:CEL140:X:14845855:14849111:1 gene:C27C12.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037266 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14848773-14849056(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (3 domains)
Ensembl C27C12.2
Entrez Gene 181580 Entrez gene
SwissProt Q18250 EMBL-EBI
WormBase CE20531 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93744 Hypothetical protein C27C12.2 [Caenorhabditis elegans] ref|NP_510462.1| C27C12.2 [Caenorhabditis elegans] 0.0
blast CAE63237 Hypothetical protein CBG07600 [Caenorhabditis briggsae] 1.0E-152
blast CAE69255 Hypothetical protein CBG15303 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 9.6E-8
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 3.2E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.2E-5
Sequence
Target Sequence 
>C. ELEGANS:174506_AT
tccacaacctcgctcaaatatcataaaaacctctggcatttttttcatttttttctcgaa
aaattctttgtcttttttatttcttgtatttgtcgtattaaaaattaaattaccttgatt
cctgctcctctttattctggtatgacttttgcactctccctaacagaaaaaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACAACCTCGCTCAAATATCATA 664 587 14 Antisense
AATATCATAAAAACCTCTGGCATTT 489 173 30 Antisense
TAAAAACCTCTGGCATTTTTTTCAT 71 639 37 Antisense
TCTTTTTTATTTCTTGTATTTGTCG 339 615 84 Antisense
TTTATTTCTTGTATTTGTCGTATTA 658 673 89 Antisense
ATTAAATTACCTTGATTCCTGCTCC 259 13 117 Antisense
CCTGCTCCTCTTTATTCTGGTATGA 408 267 134 Antisense
GCTCCTCTTTATTCTGGTATGACTT 680 297 137 Antisense
TTCTGGTATGACTTTTGCACTCTCC 94 695 148 Antisense
TTTTGCACTCTCCCTAACAGAAAAA 457 675 160 Antisense
GCACTCTCCCTAACAGAAAAAACAC 318 307 164 Antisense
Sequence Source Affymetrix Proprietary Database