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[174505_at]

Description C38133_rc /REP_DB=TREMBL Accession /GB=C38133 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk488d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 63      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 74      6grp_total > 53      4grp_total > 12      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 392
(-1.9)
P 		290.4
(-3)
P 		356.9
(-2.3)
P 		839.6
(3)
P 		549
B 549.9
(1.1)
P 		512.9
(0.5)
P 		307.4
(-3)
P 		663.7
(3)
P 		356
C 548.4
(-0.2)
P 		383.5
(-3)
P 		443.8
(-2)
P 		736
(3)
P 		353
avr 496.8
(-1) 		395.6
(-2.6) 		369.4
(-3) 		746.4
(3) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 710.8
(-0.4)
P 		457.1
(-3)
P 		1052.6
(3)
P 		542.2
(-2.1)
P 		789.8
(0.4)
P 		665.4
(-0.9)
P 		596
B 646.2
(-2.4)
P 		609.4
(-3)
P 		712.6
(-1.3)
P 		976.7
(3)
P 		645.6
(-2.4)
P 		656.6
(-2.2)
P 		367
C 617.8
(1.1)
P 		563.4
(-0.7)
P 		673.7
(3)
P 		548.5
(-1.2)
P 		496.5
(-3)
P 		664.4
(2.7)
P 		177
avr 658.3
(-0.4) 		543.3
(-3) 		813
(3) 		689.1
(0.2) 		644
(-0.8) 		662.1
(-0.4) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 142.7
(3)
P 		63
(-3)
P 		93.3
(-0.7)
P 		122.9
(1.5)
P 		80
B 175.4
(3)
P 		126.7
(0.2)
P 		71.2
(-3)
P 		141.4
(1)
P 		104
C 181.5
(3)
P 		110.3
(-3)
P 		154.7
(0.7)
P 		124.1
(-1.8)
P 		71
avr 166.5
(3) 		100
(-3) 		106.4
(-2.4) 		129.5
(-0.3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 131
(-3)
P 		162.6
(-1.2)
P 		229.2
(2.5)
P 		137.5
(-2.6)
P 		238.3
(3)
P 		162
(-1.3)
P 		107
B 224.9
(0.5)
P 		202.9
(-1)
P 		173
(-3)
P 		258.7
(2.8)
P 		262.3
(3)
P 		244.8
(1.8)
P 		89
C 229
(3)
P 		171.9
(0.1)
P 		171.5
(0.1)
P 		110.3
(-3)
P 		160.7
(-0.5)
P 		222.4
(2.7)
P 		119
avr 195
(0) 		179.1
(-1.8) 		191.2
(-0.4) 		168.8
(-3) 		220.4
(3) 		209.7
(1.8) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174505_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21269
Sequence Type Exemplar sequence
Representative Public ID C38133 NCBI
Target Description C38133_rc /REP_DB=TREMBL Accession /GB=C38133 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk488d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T28C6.8 ENSEMBL cdna:known chromosome:CEL140:IV:8829602:8830649:-1 gene:T28C6.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005656 9/11 Negative Strand Matching Probes None
GENEFINDER00000005665 9/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8829617-8829896(-) 100.0 100.0
Public Domain and Genome References
Ensembl T28C6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90999 Hypothetical protein T28C6.8 [Caenorhabditis elegans] ref|NP_501529.1| T28C6.8 [Caenorhabditis elegans] 2.0E-57
blast CAE69441 Hypothetical protein CBG15628 [Caenorhabditis briggsae] 2.0E-39
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T28C6.8 1 23-42
Sequence
Target Sequence 
>C. ELEGANS:174505_AT
atatttccgattattctgatacttgatcagaagttttaaatgatacttatcccatttttc
tttacaaaaaagtctcctatcgtctcaccatttgatttcttgtcactttgctctttttcg
cgttccaaagccaatagtttcgtctcgaaagcttttgattttatcagtgctcgatgatcg
acctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTTCCGATTATTCTGATACTTG 150 19 51 Antisense
GATACTTATCCCATTTTTCTTTACA 41 425 92 Antisense
ACAAAAAAGTCTCCTATCGTCTCAC 227 111 114 Antisense
TCCTATCGTCTCACCATTTGATTTC 162 593 125 Antisense
GTCTCACCATTTGATTTCTTGTCAC 625 469 132 Antisense
CATTTGATTTCTTGTCACTTTGCTC 371 215 139 Antisense
CTCTTTTTCGCGTTCCAAAGCCAAT 185 231 161 Antisense
TCCAAAGCCAATAGTTTCGTCTCGA 700 587 174 Antisense
TTTCGTCTCGAAAGCTTTTGATTTT 431 671 188 Antisense
AAGCTTTTGATTTTATCAGTGCTCG 423 149 199 Antisense
ATCAGTGCTCGATGATCGACCTGTA 432 29 213 Antisense
Sequence Source Affymetrix Proprietary Database