[Home] | [Total List]

[174504_at]

Description CEK004F6R_rc /REP_DB=TREMBL Accession /GB=D27065 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 10      6grp_total > 17      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 820
1 2 3 4 range
A 1676.6
(3)
P 		936.3
(-2.4)
P 		1120.1
(-1.1)
P 		856.8
(-3)
P 		820
B 1670.5
(3)
P 		1080.4
(-3)
P 		1201.2
(-1.8)
P 		1527.1
(1.5)
P 		590
C 1541.1
(3)
P 		1400.7
(1.3)
P 		1046
(-3)
P 		1143.8
(-1.8)
P 		495
avr 1629.4
(3) 		1139.1
(-2.8) 		1122.4
(-3) 		1175.9
(-2.4) 		507

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1479
1 2 3 4 5 6 range
A 1649.5
(3)
P 		1618.5
(2.7)
P 		1004.6
(-2.2)
P 		908.4
(-3)
P 		1186.6
(-0.7)
P 		1421.5
(1.2)
P 		741
B 2071.8
(3)
P 		1279.6
(-1.2)
P 		1048.9
(-2.5)
P 		1108.2
(-2.1)
P 		1062.6
(-2.4)
P 		946
(-3)
P 		1126
C 2255.8
(3)
P 		1154.1
(-1.5)
P 		1180.3
(-1.4)
P 		776.6
(-3)
P 		1295.9
(-0.9)
P 		939.6
(-2.3)
P 		1479
avr 1992.4
(3) 		1350.7
(-0.6) 		1077.9
(-2.2) 		931.1
(-3) 		1181.7
(-1.6) 		1102.4
(-2) 		1061
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 485
1 2 3 4 range
A 610.4
(3)
P 		203.2
(-2)
P 		292.8
(-0.9)
P 		125.4
(-3)
P 		485
B 532.7
(3)
P 		266.8
(-3)
P 		278.3
(-2.7)
P 		325.4
(-1.7)
P 		266
C 510.1
(3)
P 		402.7
(1)
P 		364.6
(0.2)
P 		192.9
(-3)
P 		317
avr 551.1
(3) 		290.9
(-1.6) 		311.9
(-1.3) 		214.6
(-3) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 680
1 2 3 4 5 6 range
A 304.1
(-1.6)
P 		575.6
(3)
P 		218.8
(-3)
P 		230.4
(-2.8)
P 		358.1
(-0.7)
P 		346.1
(-0.9)
P 		357
B 720.9
(3)
P 		425.9
(-0.8)
P 		254.7
(-3)
P 		293.5
(-2.5)
P 		431.7
(-0.7)
P 		352.8
(-1.7)
P 		466
C 836.1
(3)
P 		352.1
(-1.3)
P 		300.4
(-1.7)
P 		156.2
(-3)
P 		419.3
(-0.7)
P 		314.5
(-1.6)
P 		680
avr 620.4
(3) 		451.2
(0.4) 		258
(-2.5) 		226.7
(-3) 		403
(-0.3) 		337.8
(-1.3) 		394
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20239
Sequence Type Exemplar sequence
Representative Public ID CEK004F6R NCBI
Target Description CEK004F6R_rc /REP_DB=TREMBL Accession /GB=D27065 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059082 NCBI Caenorhabditis elegans F28B3.1 (F28B3.1) mRNA, complete cds. 11/11 None
F28B3.1 ENSEMBL cdna:known chromosome:CEL140:I:4943024:4949329:1 gene:F28B3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4948964-4949307(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F28B3.1
Entrez Gene 172113 Entrez gene
SwissProt O01787 EMBL-EBI
WormBase CE36644 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9413.1.S1_S_AT similar to Protein KIAA0934 cfa
CANINE_2:CFAAFFX.9422.1.S1_S_AT similar to Protein KIAA0934 cfa
DROSOPHILA_2:1634461_AT DISCO Interacting Protein 2 dm
DROSGENOME1:152595_AT DISCO Interacting Protein 2 dm
CHICKEN:GGAAFFX.4144.1.S1_S_AT similar to Hypothetical protein KIAA0934 gga
CHICKEN:GGAAFFX.4144.3.S1_S_AT similar to Hypothetical protein KIAA0934 gga
HG-U95AV2:33407_AT KIAA0934 hs
HU35KSUBA:RC_AA453790_AT KIAA0934 hs
HU35KSUBC:RC_N27845_AT KIAA0934 hs
HU35KSUBD:RC_AA410299_AT KIAA0934 hs
U133_X3P:HS2.411370.1.S1_3P_S_AT KIAA0934 hs
U133_X3P:HS.227716.0.S2_3P_A_AT KIAA0934 hs
U133_X3P:HS.227716.0.S1_3P_AT KIAA0934 hs
HG-U133_PLUS_2:1565681_S_AT KIAA0934 hs
HG-U133A_2:212503_S_AT KIAA0934 hs
HG-U133_PLUS_2:212503_S_AT KIAA0934 hs
HG-U133A:212503_S_AT KIAA0934 hs
HG-U133A_2:212504_AT KIAA0934 hs
HG-U133_PLUS_2:212504_AT KIAA0934 hs
HG-U133A:212504_AT KIAA0934 hs
HG-U95AV2:33408_AT KIAA0934 hs
U133_X3P:HS2.397085.1.S1_3P_AT KIAA0934 hs
HG-U133_PLUS_2:1560763_AT KIAA0934 hs
HG-U95C:52310_AT KIAA0934 hs
HG-U133_PLUS_2:1565680_AT KIAA0934 hs
HG-U133_PLUS_2:238354_X_AT KIAA0934 hs
HG-U133B:238354_X_AT KIAA0934 hs
HG-U133_PLUS_2:238358_X_AT KIAA0934 hs
HG-U133B:238358_X_AT KIAA0934 hs
HG-U95C:63763_AT KIAA0934 hs
HG-U95D:76512_AT KIAA0934 hs
HG-U95E:89094_AT KIAA0934 hs
HG-U95D:90172_S_AT KIAA0934 hs
HG-U95D:90174_R_AT KIAA0934 hs
HU35KSUBC:RC_H85034_AT KIAA0934 hs
U133_X3P:HS.145492.0.A1_3P_AT KIAA0934 hs
U133_X3P:HS.145492.0.A1_3P_X_AT KIAA0934 hs
U133_X3P:HS.145492.0.S1_3P_AT KIAA0934 hs
MG-U74BV2:107787_AT RIKEN cDNA 2900024P20 gene mm
MOE430B:1429064_AT RIKEN cDNA 2900024P20 gene mm
MOUSE430_2:1429064_AT RIKEN cDNA 2900024P20 gene mm
MOE430B:1456122_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MOUSE430_2:1456122_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MG-U74CV2:136439_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MOUSE430_2:1457180_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MOE430B:1457180_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MOUSE430_2:1458309_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
MOE430B:1458309_AT RIKEN cDNA 2900024P20 gene, mRNA (cDNA clone IMAGE:30545711) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4869 cysteine protease inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21373 Hypothetical protein F28B3.1 [Caenorhabditis elegans] ref|NP_491483.2| F28B3.1 [Caenorhabditis elegans] 0.0
blast CAE73119 Hypothetical protein CBG20501 [Caenorhabditis briggsae] 0.0
blast XP_391894 PREDICTED: similar to ENSANGP00000025395 [Apis mellifera] 0.0
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 8.0E-11
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 8.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.1E-13
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 1.9E-6
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.7E-12
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.5E-4
Sequence
Target Sequence 
>C. ELEGANS:174504_AT
caaaagtgccctttatcattcggttccagtttctttttattttctcatttctcttcactt
ttcttgcctttctaccttttttcaaaatttgaattgtccacaatcagtcaatgtatcata
aaatcccatgcctcactcacaaacacactgcttacttttttgtcgggtttctttacttat
ttcttttctcagaactttctaagctatccagcttcttctccccccagatacacaccggtt
ctcgacacctctagttgctatttgactgccttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAGTGCCCTTTATCATTCGGTT 159 191 20 Antisense
TCATTCGGTTCCAGTTTCTTTTTAT 249 617 35 Antisense
TTGTCCACAATCAGTCAATGTATCA 334 709 113 Antisense
GTATCATAAAATCCCATGCCTCACT 688 453 132 Antisense
CTCACTCACAAACACACTGCTTACT 688 227 151 Antisense
CACACTGCTTACTTTTTTGTCGGGT 329 195 163 Antisense
TTTCTTTACTTATTTCTTTTCTCAG 41 667 187 Antisense
TCTTTTCTCAGAACTTTCTAAGCTA 490 615 201 Antisense
TTCTAAGCTATCCAGCTTCTTCTCC 492 691 216 Antisense
TCTCGACACCTCTAGTTGCTATTTG 535 611 259 Antisense
TCTAGTTGCTATTTGACTGCCTTCC 42 615 269 Antisense
Sequence Source Affymetrix Proprietary Database