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[174503_at]

Description C56289_rc /REP_DB=TREMBL Accession /GB=C56289 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk252c12 : 3prime end, single read.
Cluster 6grp_total > 91      4grp_total > 34      6grp_cgc > 97      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 5.6
(-3)
A 		31.4
(3)
A 		18.9
(0.1)
A 		11.3
(-1.7)
A 		26
B 47
(3)
A 		37
(1.5)
A 		7.9
(-3)
A 		23.7
(-0.6)
A 		39
C 2
(-3)
A 		10.6
(-1.6)
A 		28.3
(1.3)
A 		38.4
(3)
A 		36
avr 18.2
(-3) 		26.3
(3) 		18.4
(-2.9) 		24.5
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 33.2
(3)
A 		11.3
(-1.8)
A 		15.7
(-0.9)
A 		7.4
(-2.7)
A 		26.2
(1.5)
A 		6
(-3)
A 		27
B 5.6
(-2.6)
A 		3.2
(-2.9)
A 		4.7
(-2.7)
A 		52.2
(3)
A 		2.2
(-3)
A 		21.1
(-0.7)
A 		50
C 15.3
(-1.6)
A 		39.1
(1.6)
A 		5.1
(-3)
A 		21.7
(-0.8)
A 		49.4
(3)
A 		22.5
(-0.6)
A 		44
avr 18
(0.1) 		17.9
(0) 		8.5
(-3) 		27.1
(3) 		25.9
(2.6) 		16.5
(-0.4) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2
(-2.5)
A 		6.8
(3)
A 		4.9
(0.8)
A 		1.6
(-3)
A 		5
B 15
(3)
A 		9.1
(0.3)
A 		1.8
(-3)
A 		5
(-1.5)
A 		13
C 0.7
(-3)
A 		3
(-1.5)
A 		9.9
(3)
A 		6.5
(0.8)
A 		9
avr 5.9
(1.7) 		6.3
(3) 		5.5
(0.5) 		4.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 6.1
(1.3)
A 		4
(-0.7)
A 		3.4
(-1.2)
A 		1.9
(-2.6)
A 		7.9
(3)
A 		1.5
(-3)
A 		6
B 1.9
(-2.5)
A 		1.1
(-2.9)
A 		1.1
(-2.9)
A 		13.8
(3)
A 		0.9
(-3)
A 		7.9
(0.3)
A 		13
C 5.7
(-1.2)
A 		11.9
(1.3)
A 		1.3
(-3)
A 		4.4
(-1.7)
A 		16
(3)
A 		7.5
(-0.5)
A 		15
avr 4.6
(-0.5) 		5.7
(0.6) 		1.9
(-3) 		6.7
(1.5) 		8.3
(3) 		5.6
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21243
Sequence Type Exemplar sequence
Representative Public ID C56289 NCBI
Target Description C56289_rc /REP_DB=TREMBL Accession /GB=C56289 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk252c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C56289
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C56289 C56289_rc /REP_DB=TREMBL Accession /GB=C56289 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk252c12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065077 11/11 Negative Strand Matching Probes A 
GENEFINDER00000027594 9/11 Negative Strand Matching Probes None
SNAP00000027588 9/11 Negative Strand Matching Probes None
F53A3.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1939085-1939365(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174503_AT
gataaaatcgaatcatcgtccattcggcatttgcggcggcttttgctgggcctgggcctg
agcctgagcctgggcctgttgagcctgctggacttgggccaggagcaaatttggctgtag
accgagcagttgctgctggaattgttgagcttgagcctgggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAAATCGAATCATCGTCCATTC 547 423 47 Antisense
GAATCATCGTCCATTCGGCATTTGC 64 329 56 Antisense
CCTGTTGAGCCTGCTGGACTTGGGC 271 267 121 Antisense
CCTGCTGGACTTGGGCCAGGAGCAA 600 261 130 Antisense
GGACTTGGGCCAGGAGCAAATTTGG 151 525 136 Antisense
GAGCAAATTTGGCTGTAGACCGAGC 537 387 149 Antisense
ATTTGGCTGTAGACCGAGCAGTTGC 505 17 155 Antisense
GGCTGTAGACCGAGCAGTTGCTGCT 55 541 159 Antisense
AGACCGAGCAGTTGCTGCTGGAATT 201 71 165 Antisense
GCTGGAATTGTTGAGCTTGAGCCTG 71 295 181 Antisense
AATTGTTGAGCTTGAGCCTGGGCGG 94 179 186 Antisense
Sequence Source Affymetrix Proprietary Database