[Home] | [Total List]

[174502_s_at]

Description CEC2754_rc /REP_DB=TREMBL Accession /GB=C11275 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk170b5 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 74      4grp_high_8_8 > 23      6grp_total > 64      4grp_total > 08      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 24.9
(-3)
A 		90.1
(-1)
M 		102.8
(-0.6)
A 		216.2
(3)
P 		191
B 54.6
(-3)
P 		66.6
(-2.7)
P 		65.3
(-2.7)
A 		295.1
(3)
P 		241
C 46.3
(-2.4)
A 		33.7
(-3)
A 		152.3
(2.3)
P 		167.5
(3)
P 		134
avr 41.9
(-3) 		63.5
(-2.3) 		106.8
(-0.9) 		226.3
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 216
1 2 3 4 5 6 range
A 48.1
(-3)
A 		125.3
(-0.3)
P 		220.9
(3)
P 		137.7
(0.1)
P 		163.8
(1)
P 		143.7
(0.3)
P 		173
B 122.9
(-3)
P 		176.2
(-0.1)
P 		165.1
(-0.7)
P 		185.6
(0.4)
P 		137.5
(-2.2)
P 		233.1
(3)
P 		110
C 66.3
(-3)
A 		164.1
(-0)
P 		214.6
(1.5)
P 		173.2
(0.2)
P 		183.9
(0.6)
P 		264.5
(3)
P 		198
avr 79.1
(-3) 		155.2
(0.4) 		200.2
(2.4) 		165.5
(0.8) 		161.7
(0.7) 		213.8
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 9.1
(-3)
A 		19.6
(-0.2)
M 		26.9
(1.7)
A 		31.7
(3)
P 		23
B 17.4
(-2.7)
P 		16.5
(-2.8)
P 		15.1
(-3)
A 		62.9
(3)
P 		48
C 15.3
(-2.2)
A 		9.7
(-3)
A 		53.1
(3)
P 		28.2
(-0.4)
P 		43
avr 13.9
(-3) 		15.3
(-2.7) 		31.7
(1) 		40.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 8.9
(-3)
A 		44.6
(2.3)
P 		48.1
(2.8)
P 		34.9
(0.9)
P 		49.4
(3)
P 		35
(0.9)
P 		41
B 42.7
(-2.7)
P 		58.6
(-0.6)
P 		40.1
(-3)
P 		49.2
(-1.8)
P 		55.9
(-1)
P 		86.9
(3)
P 		47
C 24.6
(-3)
A 		50.1
(-0.6)
P 		54.6
(-0.2)
P 		34.8
(-2)
P 		59.5
(0.3)
P 		88.6
(3)
P 		64
avr 25.4
(-3) 		51.1
(0.4) 		47.6
(-0) 		39.6
(-1.1) 		54.9
(1) 		70.2
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174502_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20365
Sequence Type Exemplar sequence
Representative Public ID CEC2754 NCBI
Target Description CEC2754_rc /REP_DB=TREMBL Accession /GB=C11275 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk170b5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059145 NCBI Caenorhabditis elegans C32E12.4 (C32E12.4) mRNA, complete cds. 11/11 A 
C32E12.4 ENSEMBL cdna:known chromosome:CEL140:I:5230566:5241917:-1 gene:C32E12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5235950-5236562(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32E12.4
Entrez Gene 172163 Entrez gene
SwissProt Q95Q77 EMBL-EBI
WormBase CE30496 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16309 Hypothetical protein C32E12.4 [Caenorhabditis elegans] ref|NP_491546.2| C32E12.4 [Caenorhabditis elegans] 0.0
blast T25592 hypothetical protein C32E12.4 - Caenorhabditis elegans 0.0
blast CAE67371 Hypothetical protein CBG12847 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174502_S_AT
gttttagaaccttcagaaagtcacgaattatttgtgactccaccaatccaacttatgact
gagagtttggtggaagagctgattgaagaagcttgttatggcgagattcccgaggaaaca
ctttttgcgttggatgaagttgaagttgaagattatacgacattcaagtggttcccacat
ttgttcgtcaaacaactgaaaacatccgagaagagtctgcatcccgatttgcaactgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTAGAACCTTCAGAAAGTCACG 296 445 16 Antisense
GAATTATTTGTGACTCCACCAATCC 348 325 40 Antisense
TGACTCCACCAATCCAACTTATGAC 575 569 50 Antisense
CCACCAATCCAACTTATGACTGAGA 465 273 55 Antisense
AGCTTGTTATGGCGAGATTCCCGAG 312 77 105 Antisense
GATTCCCGAGGAAACACTTTTTGCG 116 433 120 Antisense
GGAAACACTTTTTGCGTTGGATGAA 453 527 129 Antisense
GACATTCAAGTGGTTCCCACATTTG 494 369 174 Antisense
CCACATTTGTTCGTCAAACAACTGA 465 275 190 Antisense
ACATCCGAGAAGAGTCTGCATCCCG 508 99 217 Antisense
GTCTGCATCCCGATTTGCAACTGAT 465 471 230 Antisense
Sequence Source Affymetrix Proprietary Database