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[174501_at]

Description C54410_rc /REP_DB=TREMBL Accession /GB=C54410 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk357e12 : 3prime end, single read.
Cluster 6grp_total > 85      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 17.7
(-3)
A 		30.9
(-1.7)
A 		28.5
(-1.9)
A 		78.1
(3)
P 		60
B 29.7
(3)
A 		6
(-3)
A 		6.4
(-2.9)
A 		16.3
(-0.4)
A 		24
C 34.6
(-0.9)
P 		23.2
(-2)
P 		13.5
(-3)
A 		74.6
(3)
P 		61
avr 27.3
(-1.3) 		20
(-2.4) 		16.1
(-3) 		56.3
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 22.3
(0.7)
A 		2.2
(-3)
A 		34.9
(3)
A 		14.8
(-0.7)
A 		27.3
(1.6)
A 		33
(2.7)
A 		33
B 3.7
(-2.8)
A 		2.5
(-3)
A 		3.4
(-2.8)
A 		35.9
(3)
A 		21.2
(0.4)
A 		34.8
(2.8)
P 		33
C 18
(-0.5)
A 		40.5
(3)
P 		4.2
(-2.7)
A 		25.2
(0.6)
A 		2.2
(-3)
A 		20
(-0.2)
A 		38
avr 14.7
(-2.8) 		15.1
(-2.6) 		14.2
(-3) 		25.3
(1.4) 		16.9
(-1.9) 		29.3
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.4
(-3)
A 		6.7
(-2.6)
A 		7.5
(-1.7)
A 		11.4
(3)
P 		5
B 9.5
(3)
A 		1.5
(-3)
A 		1.5
(-3)
A 		3.5
(-1.5)
A 		8
C 11.5
(2.2)
P 		6.7
(-1.5)
P 		4.7
(-3)
A 		12.6
(3)
P 		8
avr 9.1
(2.9) 		5
(-2.5) 		4.6
(-3) 		9.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.1
(-0.3)
A 		0.8
(-3)
A 		7.6
(2.5)
A 		3.7
(-0.6)
A 		8.2
(3)
A 		8
(2.8)
A 		7
B 1.3
(-2.8)
A 		0.8
(-3)
A 		0.8
(-3)
A 		9.5
(1.3)
A 		8.6
(0.8)
A 		13
(3)
P 		12
C 6.7
(0.1)
A 		12.4
(3)
P 		1.1
(-2.8)
A 		5.1
(-0.7)
A 		0.7
(-3)
A 		6.7
(0.1)
A 		12
avr 4
(-2.2) 		4.7
(-1.5) 		3.2
(-3) 		6.1
(-0.1) 		5.8
(-0.4) 		9.2
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22310
Sequence Type Exemplar sequence
Representative Public ID C54410 NCBI
Target Description C54410_rc /REP_DB=TREMBL Accession /GB=C54410 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk357e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C29F7.6 ENSEMBL cdna:known chromosome:CEL140:X:13436375:13441804:1 gene:C29F7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13441040-13441320(+) 100.0 100.0
Public Domain and Genome References
Ensembl C29F7.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07325 Hypothetical protein C29F7.6 [Caenorhabditis elegans] ref|NP_510239.1| C29F7.6 [Caenorhabditis elegans] 0.0
blast CAA94916 Hypothetical protein F23D12.5 [Caenorhabditis elegans] ref|NP_510405.1| F23D12.5 [Caenorhabditis elegans] 2.0E-80
blast CAE69850 Hypothetical protein CBG16178 [Caenorhabditis briggsae] 7.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 1.5E-46
Sequence
Target Sequence 
>C. ELEGANS:174501_AT
ataatttatttctgttaatctattttttaaagcttgaaagctgaatttttgtgttagcat
cacctacttcataatgtctttctgttttttgcaagatttacccctcacctcgactctcat
tcatactattctatgtgcttttgaattctgttcaatattctcctgttttttaaattatct
gtaatattcgcgttgtcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAATTTATTTCTGTTAATCTATTT 585 17 61 Antisense
GCTTGAAAGCTGAATTTTTGTGTTA 386 307 92 Antisense
TTGTGTTAGCATCACCTACTTCATA 298 709 109 Antisense
ACCTACTTCATAATGTCTTTCTGTT 464 87 122 Antisense
TGTTTTTTGCAAGATTTACCCCTCA 180 559 143 Antisense
CTCGACTCTCATTCATACTATTCTA 312 233 169 Antisense
TTCTATGTGCTTTTGAATTCTGTTC 477 691 189 Antisense
AATTCTGTTCAATATTCTCCTGTTT 221 177 204 Antisense
TGTTCAATATTCTCCTGTTTTTTAA 694 559 209 Antisense
TTCTCCTGTTTTTTAAATTATCTGT 254 687 218 Antisense
TATCTGTAATATTCGCGTTGTCATG 149 657 236 Antisense
Sequence Source Affymetrix Proprietary Database