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[174500_at]

Description C38956_rc /REP_DB=TREMBL Accession /GB=C38956 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk503c11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 67      6grp_total > 48      4grp_total > 10      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3627
1 2 3 4 range
A 1772.2
(-3)
P 		2041.9
(-2.5)
P 		1977.7
(-2.6)
P 		5263.6
(3)
P 		3491
B 1868.2
(-2.6)
P 		1999
(-2.4)
P 		1692.8
(-3)
P 		4544.8
(3)
P 		2852
C 1636.2
(-3)
P 		2284.9
(-1.2)
P 		1751.9
(-2.7)
P 		3763
(3)
P 		2127
avr 1758.9
(-3) 		2108.6
(-2.2) 		1807.5
(-2.9) 		4523.8
(3) 		2765

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1060
1 2 3 4 5 6 range
A 2323.5
(3)
P 		1587.3
(-2.1)
P 		1714.6
(-1.2)
P 		1463.3
(-3)
P 		1961.4
(0.5)
P 		2145.1
(1.8)
P 		860
B 2288.2
(3)
P 		1753.7
(-0.5)
P 		1440.9
(-2.6)
P 		1700.6
(-0.9)
P 		1382.1
(-3)
P 		2257.4
(2.8)
P 		906
C 1915.2
(1.4)
P 		1895.9
(1.3)
P 		1263.1
(-3)
P 		1366.1
(-2.3)
P 		1901.6
(1.3)
P 		2154.9
(3)
P 		892
avr 2175.6
(2.9) 		1745.6
(-0.7) 		1472.9
(-3) 		1510
(-2.7) 		1748.4
(-0.7) 		2185.8
(3) 		713
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 576
1 2 3 4 range
A 645.3
(0.7)
P 		443.2
(-3)
P 		517
(-1.6)
P 		770.5
(3)
P 		327
B 595.8
(-0.9)
P 		493.7
(-1.9)
P 		392.3
(-3)
P 		968.5
(3)
P 		576
C 541.6
(-3)
P 		656.9
(3)
P 		610.6
(0.6)
P 		634.5
(1.8)
P 		115
avr 594.2
(-1.2) 		531.3
(-2.5) 		506.6
(-3) 		791.2
(3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 567
1 2 3 4 5 6 range
A 428.3
(-1.4)
P 		564.5
(2.3)
P 		373.4
(-2.9)
P 		371.1
(-3)
P 		591.9
(3)
P 		522.3
(1.1)
P 		221
B 796.2
(2.4)
P 		583.7
(-0.1)
P 		349.9
(-3)
P 		450.4
(-1.8)
P 		561.5
(-0.4)
P 		841.8
(3)
P 		492
C 709.9
(2.8)
P 		578.5
(1.1)
P 		321.5
(-2.4)
P 		274.7
(-3)
P 		615.3
(1.6)
P 		721.4
(3)
P 		447
avr 644.8
(2.1) 		575.6
(0.9) 		348.3
(-3) 		365.4
(-2.7) 		589.6
(1.2) 		695.2
(3) 		347
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20471
Sequence Type Exemplar sequence
Representative Public ID C38956 NCBI
Target Description C38956_rc /REP_DB=TREMBL Accession /GB=C38956 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk503c11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T15H9.1.1 ENSEMBL cdna:known chromosome:CEL140:II:9617380:9619154:-1 gene:T15H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9617450-9617731(-) 95.37 100.0
Public Domain and Genome References
Ensembl T15H9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87414 Hypothetical protein T15H9.1 [Caenorhabditis elegans] ref|NP_496072.2| T15H9.1 [Caenorhabditis elegans] sp|Q10005|YRY1_CAEEL Hypothetical protein T15H9.1 in chromosome II 4.0E-41
blast CAE57914 Hypothetical protein CBG00965 [Caenorhabditis briggsae] 1.0E-36
blast AAF51493 CG4164-PA [Drosophila melanogaster] gb|AAK93202.1| LD30318p [Drosophila melanogaster] ref|NP_608525.1| CG4164-PA [Drosophila melanogaster] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002939 EMBL-EBI Chaperone DnaJ, C-terminal 3.4E-6
Sequence
Target Sequence 
>C. ELEGANS:174500_AT
ctctgcttttcccatgaatccaaagtctctgaaattatcgattgattgttttttttgggt
attccattttctcatttggtggccttctcaattttctcgcaaaaatctagttttctcagt
tgttgtatctgtgatagaaattaattttttttaaatgatttctgtaaagttctagtgtat
aattcccatttttgactggaatttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTGCTTTTCCCATGAATCCAAAG 73 233 39 Antisense
TTTCCCATGAATCCAAAGTCTCTGA 703 667 46 Antisense
AATCCAAAGTCTCTGAAATTATCGA 429 165 55 Antisense
CCATTTTCTCATTTGGTGGCCTTCT 241 271 102 Antisense
TCATTTGGTGGCCTTCTCAATTTTC 249 619 110 Antisense
GCCTTCTCAATTTTCTCGCAAAAAT 495 281 120 Antisense
AAAATCTAGTTTTCTCAGTTGTTGT 66 133 140 Antisense
GTTTTCTCAGTTGTTGTATCTGTGA 327 449 148 Antisense
AATGATTTCTGTAAAGTTCTAGTGT 458 163 192 Antisense
AGTTCTAGTGTATAATTCCCATTTT 11 63 206 Antisense
TCCCATTTTTGACTGGAATTTTTCA 560 597 222 Antisense
Sequence Source Affymetrix Proprietary Database