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[174497_at]

Description CEC2344_rc /REP_DB=TREMBL Accession /GB=C11234 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk169d3 : 3prime end, single read.
Cluster 6grp_total > 11      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 9.3
(-3)
A 		24.3
(-2.3)
A 		22.8
(-2.4)
A 		142.4
(3)
P 		133
B 25.8
(-3)
A 		43.3
(1.9)
P 		38.3
(0.5)
P 		47.3
(3)
P 		22
C 18.6
(-3)
A 		19.4
(-3)
A 		21.4
(-2.9)
A 		208.3
(3)
P 		190
avr 17.9
(-3) 		29
(-2.4) 		27.5
(-2.5) 		132.7
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 22.5
(0.1)
A 		10.8
(-1.6)
A 		41.7
(3)
P 		16.5
(-0.8)
A 		36
(2.1)
M 		1.6
(-3)
A 		40
B 24.4
(0.9)
A 		34.1
(3)
P 		12
(-1.9)
A 		12.5
(-1.8)
A 		30
(2.1)
P 		6.9
(-3)
A 		27
C 25.4
(-2.5)
A 		76.7
(3)
P 		31.8
(-1.8)
A 		25.8
(-2.4)
A 		20.5
(-3)
A 		21.2
(-2.9)
A 		56
avr 24.1
(-0.2) 		40.5
(3) 		28.5
(0.6) 		18.3
(-1.4) 		28.8
(0.7) 		9.9
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.4
(-3)
A 		5.3
(-2.3)
A 		6
(-2.1)
A 		20.8
(3)
P 		17
B 8.2
(-3)
A 		10.7
(3)
P 		8.9
(-1.3)
P 		10.1
(1.6)
P 		3
C 6.1
(-2.9)
A 		5.6
(-3)
A 		7.4
(-2.6)
A 		35.1
(3)
P 		30
avr 5.9
(-3) 		7.2
(-2.5) 		7.4
(-2.4) 		22
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 4.2
(-0.8)
A 		3.8
(-1.1)
A 		9.1
(2)
P 		4.2
(-0.8)
A 		10.9
(3)
M 		0.4
(-3)
A 		11
B 8.5
(0.7)
A 		11.3
(2.4)
P 		2.9
(-2.8)
A 		3.3
(-2.6)
A 		12.2
(3)
P 		2.6
(-3)
A 		10
C 9.4
(-1.6)
A 		23.4
(3)
P 		8.1
(-2)
A 		5.2
(-3)
A 		6.6
(-2.5)
A 		7.1
(-2.4)
A 		18
avr 7.4
(-0.4) 		12.8
(3) 		6.7
(-0.9) 		4.2
(-2.5) 		9.9
(1.1) 		3.4
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21089
Sequence Type Exemplar sequence
Representative Public ID CEC2344 NCBI
Target Description CEC2344_rc /REP_DB=TREMBL Accession /GB=C11234 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk169d3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC2344
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC2344 CEC2344_rc /REP_DB=TREMBL Accession /GB=C11234 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk169d3 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8349981-8350259(+) 100.0 100.0
chrIII:8341786-8342064(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174497_AT
tttaacaactgtacttcttcttcatttgaaatatttttaaacactgccatgcgttctagc
acgagcgaaacttgtaagccaccgtaccagcacctacacgaggtacggtaactgaaaact
ttttcacgtgccaggaccccgttccgggagtttgttttgtcggatttttattattctggt
caatactcattttttctcactttttcaaacgctttcaaacaaaactaagagtttattatt
gcacaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAACAACTGTACTTCTTCTTCAT 443 673 14 Antisense
GAAATATTTTTAAACACTGCCATGC 672 361 41 Antisense
TAAACACTGCCATGCGTTCTAGCAC 592 639 51 Antisense
CATGCGTTCTAGCACGAGCGAAACT 40 211 61 Antisense
GAGCGAAACTTGTAAGCCACCGTAC 707 385 76 Antisense
TACCAGCACCTACACGAGGTACGGT 392 643 98 Antisense
TGAAAACTTTTTCACGTGCCAGGAC 212 571 126 Antisense
GTCGGATTTTTATTATTCTGGTCAA 377 471 172 Antisense
TGGTCAATACTCATTTTTTCTCACT 74 553 190 Antisense
TTCTCACTTTTTCAAACGCTTTCAA 395 689 207 Antisense
AACTAAGAGTTTATTATTGCACACA 16 141 236 Antisense
Sequence Source Affymetrix Proprietary Database