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[174496_at]

Description C33028_rc /REP_DB=TREMBL Accession /GB=C33028 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339a10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 14      6grp_high1_10_10 > 30      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 81      6grp_total > 43      4grp_total > 31      6grp_high1_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 285.2
(3)
P 		222.2
(-2.3)
P 		219.7
(-2.5)
P 		213.4
(-3)
P 		72
B 310.5
(-0.2)
P 		249.5
(-3)
P 		254.3
(-2.8)
P 		380
(3)
P 		131
C 346.2
(3)
P 		295.3
(-1.4)
P 		328.5
(1.5)
P 		277.5
(-3)
P 		69
avr 314
(3) 		255.7
(-3) 		267.5
(-1.8) 		290.3
(0.6) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 256.1
(-0.3)
P 		198.3
(-3)
P 		326.5
(3)
P 		293.6
(1.5)
P 		312.8
(2.4)
P 		223.2
(-1.8)
P 		128
B 325.2
(-0.8)
P 		267.9
(-1.9)
P 		535.7
(3)
P 		291.7
(-1.5)
P 		207.6
(-3)
P 		226.1
(-2.7)
P 		328
C 362.8
(3)
P 		242.2
(-2.4)
P 		247.6
(-2.1)
P 		234.7
(-2.7)
P 		228.5
(-3)
P 		250.2
(-2)
P 		134
avr 314.7
(0.6) 		236.1
(-2.9) 		369.9
(3) 		273.3
(-1.2) 		249.6
(-2.3) 		233.2
(-3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 103.8
(3)
P 		48.2
(-1.6)
P 		57.4
(-0.8)
P 		31.2
(-3)
P 		73
B 99
(3)
P 		61.6
(-2.6)
P 		58.9
(-3)
P 		81
(0.3)
P 		40
C 114.6
(3)
P 		84.9
(0.4)
P 		114.5
(3)
P 		46.8
(-3)
P 		68
avr 105.8
(3) 		64.9
(-1.6) 		76.9
(-0.3) 		53
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 47.2
(-3)
P 		70.5
(-0)
P 		71.1
(0)
P 		74.5
(0.5)
P 		94.4
(3)
P 		54.3
(-2.1)
P 		47
B 113.2
(1.1)
P 		89.2
(-1.6)
P 		130.1
(3)
P 		77.3
(-3)
P 		84.3
(-2.2)
P 		84.3
(-2.2)
P 		53
C 134.5
(3)
P 		73.9
(-1.2)
P 		63
(-1.9)
P 		47.2
(-3)
P 		73.9
(-1.2)
P 		83.7
(-0.5)
P 		87
avr 98.3
(3) 		77.9
(-0.8) 		88.1
(1.1) 		66.3
(-3) 		84.2
(0.4) 		74.1
(-1.5) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22314
Sequence Type Exemplar sequence
Representative Public ID C33028 NCBI
Target Description C33028_rc /REP_DB=TREMBL Accession /GB=C33028 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk339a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078426 NCBI Caenorhabditis elegans C36E6.2 (C36E6.2) mRNA, complete cds. 11/11 None
C36E6.2 ENSEMBL cdna:known chromosome:CEL140:X:17452308:17455767:1 gene:C36E6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17455414-17455694(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36E6.2
Entrez Gene 181774 Entrez gene
SwissProt Q9BL99 EMBL-EBI
WormBase CE34268 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK09073 Hypothetical protein C36E6.2 [Caenorhabditis elegans] ref|NP_510827.2| C36E6.2 [Caenorhabditis elegans] 1.0E-139
blast CAE58683 Hypothetical protein CBG01857 [Caenorhabditis briggsae] 1.0E-115
blast NP_001013560 hypothetical protein LOC541415 [Danio rerio] gb|AAH90819.1| Zgc:101577 [Danio rerio] 8.0E-18
Sequence
Target Sequence 
>C. ELEGANS:174496_AT
gaatcaaaagtaatcttctaactattttacttttaaaattcaacgtagctcgggttatca
gacatctggtaactctgtaatgaaccttattgaaacatattttctcattaagatttgttc
caattgtgatagacacccagtacagatttgttgccttttccacctctcgcatttcttttt
caaactattcatcacttttttccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAAAAGTAATCTTCTAACTAT 673 325 40 Antisense
AAATTCAACGTAGCTCGGGTTATCA 239 75 75 Antisense
TAGCTCGGGTTATCAGACATCTGGT 577 649 85 Antisense
GACATCTGGTAACTCTGTAATGAAC 570 369 100 Antisense
GTAACTCTGTAATGAACCTTATTGA 359 457 108 Antisense
TTCTCATTAAGATTTGTTCCAATTG 31 691 141 Antisense
GTTCCAATTGTGATAGACACCCAGT 20 441 156 Antisense
GTGATAGACACCCAGTACAGATTTG 410 481 165 Antisense
AGTACAGATTTGTTGCCTTTTCCAC 131 63 178 Antisense
CTCTCGCATTTCTTTTTCAAACTAT 287 231 203 Antisense
TCAAACTATTCATCACTTTTTTCCC 473 627 219 Antisense
Sequence Source Affymetrix Proprietary Database