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[174495_at]

Description C53130_rc /REP_DB=TREMBL Accession /GB=C53130 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk294b12 : 3prime end, single read.
Cluster 6grp_total > 67      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 25.2
(2.2)
A 		5.1
(-3)
A 		6.8
(-2.6)
A 		28.3
(3)
A 		23
B 3.8
(-3)
A 		41.2
(1.9)
A 		49.8
(3)
A 		5
(-2.8)
A 		46
C 3.5
(-3)
A 		7
(-2.7)
A 		13.8
(-2.2)
A 		78.4
(3)
A 		75
avr 10.8
(-3) 		17.8
(-1.4) 		23.5
(-0.1) 		37.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 5.6
(-2.9)
A 		4.3
(-3)
A 		7.3
(-2.8)
A 		10
(-2.5)
A 		12.2
(-2.4)
A 		78.5
(3)
A 		74
B 36.7
(-1.1)
A 		16.8
(-2.5)
A 		33.6
(-1.3)
A 		8.7
(-3)
A 		40.2
(-0.9)
A 		97.2
(3)
P 		89
C 8.2
(-3)
A 		31
(-1.4)
A 		27.6
(-1.7)
A 		11.5
(-2.8)
A 		32.8
(-1.3)
A 		95.5
(3)
A 		87
avr 16.8
(-2.5) 		17.4
(-2.5) 		22.8
(-2.1) 		10.1
(-3) 		28.4
(-1.6) 		90.4
(3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.2
(3)
A 		1.1
(-3)
A 		1.8
(-2.5)
A 		4.1
(-0.8)
A 		8
B 1.2
(-2.9)
A 		10.2
(2.3)
A 		11.5
(3)
A 		1.1
(-3)
A 		10
C 1.2
(-3)
A 		2
(-2.6)
A 		4.8
(-1.2)
A 		13.2
(3)
A 		12
avr 3.9
(-3) 		4.4
(-1.6) 		6
(2.7) 		6.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1
(-3)
A 		1.5
(-2.8)
A 		1.6
(-2.8)
A 		2.5
(-2.5)
A 		3.7
(-2.1)
A 		19.1
(3)
A 		18
B 12.8
(-1.1)
A 		5.6
(-2.4)
A 		8.2
(-2)
A 		2.3
(-3)
A 		16.3
(-0.5)
A 		36.3
(3)
P 		34
C 3
(-2.9)
A 		9.5
(-1.5)
A 		7
(-2.1)
A 		2.3
(-3)
A 		10.6
(-1.3)
A 		32
(3)
A 		30
avr 5.6
(-2.3) 		5.5
(-2.3) 		5.6
(-2.3) 		2.4
(-3) 		10.2
(-1.2) 		29.1
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22331
Sequence Type Exemplar sequence
Representative Public ID C53130 NCBI
Target Description C53130_rc /REP_DB=TREMBL Accession /GB=C53130 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk294b12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077765
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077765 NCBI Caenorhabditis elegans K03A11.1 (K03A11.1) mRNA, complete cds. A 
K03A11.1 ENSEMBL cdna:known chromosome:CEL140:X:13051982:13058093:1 gene:K03A11.1 A 
GENEFINDER00000007883 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13051982:13067155:1 None
SNAP00000007874 ENSEMBL cdna:SNAP chromosome:CEL140:X:13052323:13055046:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13054969-13055248(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03A11.1
Entrez Gene 181434 Entrez gene
SwissProt Q27502 EMBL-EBI
WormBase CE06071 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00865 Hypothetical protein K03A11.1 [Caenorhabditis elegans] ref|NP_510166.1| K03A11.1 [Caenorhabditis elegans] 0.0
blast CAE61376 Hypothetical protein CBG05220 [Caenorhabditis briggsae] 2.0E-77
blast CAB00868 Hypothetical protein K03A11.5 [Caenorhabditis elegans] ref|NP_510167.2| K03A11.5 [Caenorhabditis elegans] 6.0E-54
blast CAE65531 Hypothetical protein CBG10508 [Caenorhabditis briggsae] 5.0E-53
blast AAC69060 Hypothetical protein T05B4.11 [Caenorhabditis elegans] ref|NP_504148.1| T05B4.11 [Caenorhabditis elegans] 6.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 3.1E-15
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.1E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 8.0E-11
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 7.9E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000007883 1 1202-1224
Sequence
Target Sequence 
>C. ELEGANS:174495_AT
cggactcgtcactggtatattgaatgattccgacagtaaatttatatttttcaaactttt
cttctcctcccacccccggcaacccttcccctgtcgtttaatagcagttgttcatatgtt
actttgcccagttttttctctactgccggatttttgaattgaaatactgccaaccgtatc
ccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGACTCGTCACTGGTATATTGAAT 492 243 67 Antisense
GTCACTGGTATATTGAATGATTCCG 692 465 74 Antisense
GAATGATTCCGACAGTAAATTTATA 491 323 88 Antisense
CCTTCCCCTGTCGTTTAATAGCAGT 366 269 150 Antisense
TGTCGTTTAATAGCAGTTGTTCATA 537 555 158 Antisense
GTTGTTCATATGTTACTTTGCCCAG 151 437 173 Antisense
GTTCATATGTTACTTTGCCCAGTTT 238 445 176 Antisense
CATATGTTACTTTGCCCAGTTTTTT 483 213 179 Antisense
TTTTTCTCTACTGCCGGATTTTTGA 557 673 199 Antisense
TTCTCTACTGCCGGATTTTTGAATT 448 691 202 Antisense
TTGAAATACTGCCAACCGTATCCCC 232 705 225 Antisense
Sequence Source Affymetrix Proprietary Database