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[174494_s_at]

Description C57782_rc /REP_DB=TREMBL Accession /GB=C57782 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298f10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 91      6grp_total > 77      4grp_total > 47      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 127.4
(3)
P 		73.7
(-3)
P 		90.4
(-1.1)
P 		107.9
(0.8)
P 		54
B 213.5
(3)
P 		122.3
(-1.8)
P 		99
(-3)
P 		98.7
(-3)
P 		115
C 150.7
(3)
P 		116.5
(-1.2)
P 		134.5
(1)
P 		101.7
(-3)
P 		49
avr 163.9
(3) 		104.2
(-2.9) 		108
(-2.5) 		102.8
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 87.2
(-3)
P 		123.4
(-1.8)
P 		122.5
(-1.8)
P 		189.8
(0.4)
P 		155.1
(-0.7)
P 		267.1
(3)
P 		180
B 165
(-1.6)
P 		102.1
(-2.7)
P 		85.4
(-3)
P 		128.5
(-2.2)
P 		201.6
(-1)
P 		427.9
(3)
P 		343
C 153.4
(-2.3)
P 		144.3
(-2.5)
P 		148.2
(-2.4)
P 		114.7
(-3)
P 		174.1
(-1.9)
P 		451.1
(3)
P 		336
avr 135.2
(-2.6) 		123.3
(-2.9) 		118.7
(-3) 		144.3
(-2.4) 		176.9
(-1.7) 		382
(3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 46.4
(3)
P 		16
(-3)
P 		23.6
(-1.5)
P 		15.8
(-3)
P 		31
B 68.1
(3)
P 		30.2
(-1.8)
P 		22.9
(-2.8)
P 		21
(-3)
P 		47
C 49.9
(3)
P 		33.5
(-0)
P 		46.9
(2.4)
P 		17.2
(-3)
P 		33
avr 54.8
(3) 		26.6
(-1.6) 		31.1
(-0.9) 		18
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 16.1
(-3)
P 		43.9
(0.4)
P 		26.7
(-1.7)
P 		48.1
(0.9)
P 		46.8
(0.8)
P 		65
(3)
P 		49
B 57.4
(-1.4)
P 		34
(-2.4)
P 		20.7
(-3)
P 		34
(-2.4)
P 		81.9
(-0.4)
P 		159.6
(3)
P 		139
C 56.9
(-1.4)
P 		44
(-2)
P 		37.7
(-2.3)
P 		23.1
(-3)
P 		56.3
(-1.4)
P 		151
(3)
P 		128
avr 43.5
(-2.1) 		40.6
(-2.2) 		28.4
(-3) 		35.1
(-2.6) 		61.7
(-0.9) 		125.2
(3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20950
Sequence Type Exemplar sequence
Representative Public ID C57782 NCBI
Target Description C57782_rc /REP_DB=TREMBL Accession /GB=C57782 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066018(11), NM_066017(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066018 NCBI Caenorhabditis elegans T26A5.5b (T26A5.5) mRNA, complete cds. 11/11 None
NM_066017 NCBI Caenorhabditis elegans T26A5.5a (T26A5.5) mRNA, complete cds. 11/11 A 
SNAP00000033261 ENSEMBL cdna:SNAP chromosome:CEL140:III:6454420:6456532:1 11/11 None
GENEFINDER00000033291 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6454420:6459341:1 11/11 None
T26A5.5b.2 ENSEMBL cdna:known chromosome:CEL140:III:6454418:6457197:1 gene:T26A5.5 11/11 None
T26A5.5b.1 ENSEMBL cdna:known chromosome:CEL140:III:6454420:6457197:1 gene:T26A5.5 11/11 None
T26A5.5a ENSEMBL cdna:known chromosome:CEL140:III:6454639:6459947:1 gene:T26A5.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6456329-6457158(+) 100.0 100.0
Public Domain and Genome References
Ensembl T26A5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498419 T26A5.5b [Caenorhabditis elegans] gb|AAN65292.1| Hypothetical protein T26A5.5b [Caenorhabditis elegans] 0.0
blast NP_498418 T26A5.5a [Caenorhabditis elegans] gb|AAN65291.1| Hypothetical protein T26A5.5a [Caenorhabditis elegans] 0.0
blast T34385 hypothetical protein T26A5.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.3E-7
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 3.4E-6
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 4.3E-7
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 3.4E-6
Sequence
Target Sequence 
>C. ELEGANS:174494_S_AT
gagatttctaggatatcccctcgacttttggatgaacttgaaactcttggcacttatatt
cgtcgaaaagcacgtgtcgaagtggctgaaggaatatgccagccagcgtctctcattaac
acattccaaactgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATTTCTAGGATATCCCCTCGAC 181 321 35 Antisense
GATATCCCCTCGACTTTTGGATGAA 63 427 46 Antisense
CCCCTCGACTTTTGGATGAACTTGA 701 259 51 Antisense
GATGAACTTGAAACTCTTGGCACTT 637 411 65 Antisense
AACTCTTGGCACTTATATTCGTCGA 537 139 76 Antisense
TATATTCGTCGAAAAGCACGTGTCG 98 661 89 Antisense
GAAAAGCACGTGTCGAAGTGGCTGA 651 353 99 Antisense
ACGTGTCGAAGTGGCTGAAGGAATA 504 95 106 Antisense
TGAAGGAATATGCCAGCCAGCGTCT 495 575 121 Antisense
GCGTCTCTCATTAACACATTCCAAA 706 291 140 Antisense
TCATTAACACATTCCAAACTGTTTT 173 617 147 Antisense
Sequence Source Affymetrix Proprietary Database