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[174490_at]

Description CEC2164_rc /REP_DB=TREMBL Accession /GB=C11216 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk169a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 10      6grp_total > 06      4grp_total > 62      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1704
1 2 3 4 range
A 2003.2
(3)
P 		994.2
(-0.6)
P 		1334.3
(0.6)
P 		318.9
(-3)
P 		1684
B 2022.4
(3)
P 		1418
(0.3)
P 		1377
(0.2)
P 		662.8
(-3)
P 		1360
C 1772
(3)
P 		1268.5
(0.5)
P 		1172.7
(0.1)
P 		545.5
(-3)
P 		1227
avr 1932.5
(3) 		1226.9
(0) 		1294.7
(0.3) 		509.1
(-3) 		1423

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1528
1 2 3 4 5 6 range
A 2327.4
(3)
P 		1451.6
(-0.9)
P 		1230.1
(-1.9)
P 		983.4
(-3)
P 		1431.8
(-1)
P 		1023
(-2.8)
P 		1344
B 1774
(3)
P 		1207.7
(-0.5)
P 		1017.7
(-1.7)
P 		1426.4
(0.9)
P 		1262.6
(-0.1)
P 		799.8
(-3)
P 		974
C 2085.6
(3)
P 		1497
(-0.2)
P 		1255.6
(-1.5)
P 		971.1
(-3)
P 		1244.2
(-1.5)
P 		1030.7
(-2.7)
P 		1115
avr 2062.3
(3) 		1385.4
(-0.7) 		1167.8
(-1.8) 		1127
(-2.1) 		1312.9
(-1) 		951.2
(-3) 		1111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 683
1 2 3 4 range
A 729.4
(3)
P 		215.8
(-1.5)
P 		348.8
(-0.3)
P 		46.7
(-3)
P 		683
B 644.9
(3)
P 		350.2
(-0.5)
P 		319.1
(-0.9)
P 		141.2
(-3)
P 		504
C 586.6
(3)
P 		364.7
(0.3)
P 		408.7
(0.8)
P 		92
(-3)
P 		495
avr 653.6
(3) 		310.2
(-0.7) 		358.9
(-0.2) 		93.3
(-3) 		560

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 429
(1)
P 		516.3
(3)
P 		267.9
(-2.6)
P 		249.4
(-3)
P 		432.1
(1.1)
P 		249.1
(-3)
P 		267
B 617.3
(3)
P 		402
(-0.5)
P 		247.1
(-3)
P 		377.8
(-0.9)
P 		513
(1.3)
P 		298.2
(-2.2)
P 		370
C 773
(3)
P 		456.8
(-0.3)
P 		319.6
(-1.7)
P 		195.3
(-3)
P 		402.6
(-0.8)
P 		345
(-1.4)
P 		578
avr 606.4
(3) 		458.4
(0.3) 		278.2
(-2.9) 		274.2
(-3) 		449.2
(0.2) 		297.4
(-2.6) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22308
Sequence Type Exemplar sequence
Representative Public ID CEC2164 NCBI
Target Description CEC2164_rc /REP_DB=TREMBL Accession /GB=C11216 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk169a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077937(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077937 NCBI Caenorhabditis elegans C04C11.2 (C04C11.2) mRNA, complete cds. 11/11 None
C04C11.2.2 ENSEMBL cdna:known chromosome:CEL140:X:14033714:14037335:1 gene:C04C11.2 11/11 None
C04C11.2.1 ENSEMBL cdna:known chromosome:CEL140:X:14033721:14037369:1 gene:C04C11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14037009-14037340(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04C11.2
Entrez Gene 181514 Entrez gene
SwissProt Q17624 EMBL-EBI
WormBase CE05210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96582 Hypothetical protein C04C11.2 [Caenorhabditis elegans] ref|NP_510338.1| C04C11.2 [Caenorhabditis elegans] 0.0
blast CAE63046 Hypothetical protein CBG07317 [Caenorhabditis briggsae] 0.0
blast CAE63047 Hypothetical protein CBG07318 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000698 EMBL-EBI Arrestin 2.7E-17
Pfam IPR000698 EMBL-EBI Arrestin 3.1E-29
Sequence
Target Sequence 
>C. ELEGANS:174490_AT
tccaaagaatcttccttttttctgaaattaaaattaaacgagccctatccttatattgtc
ggtatttttgatttgtcattcttttttattgagctcgttcaagatcataagttttttttt
tggattccaggcgccacatccggtgatccgtcaccattatttttttctctgctttttatc
ccaaataccaaccaattctctgaactgtctctttcattgttccctttttttacattttaa
agtttttgttcacatatccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCAAAGAATCTTCCTTTTTTCTGA 112 589 27 Antisense
AATTAAACGAGCCCTATCCTTATAT 578 175 58 Antisense
AGCCCTATCCTTATATTGTCGGTAT 335 81 67 Antisense
CATTCTTTTTTATTGAGCTCGTTCA 529 215 103 Antisense
CACATCCGGTGATCCGTCACCATTA 36 187 161 Antisense
ATCCGTCACCATTATTTTTTTCTCT 292 39 172 Antisense
TTTTCTCTGCTTTTTATCCCAAATA 344 677 189 Antisense
ATCCCAAATACCAACCAATTCTCTG 92 37 204 Antisense
ACCAATTCTCTGAACTGTCTCTTTC 352 85 217 Antisense
TGAACTGTCTCTTTCATTGTTCCCT 607 573 227 Antisense
TAAAGTTTTTGTTCACATATCCGTA 287 641 264 Antisense
Sequence Source Affymetrix Proprietary Database