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[174488_at]

Description C58944_rc /REP_DB=TREMBL Accession /GB=C58944 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383h12 : 3prime end, single read.
Cluster 6grp_total > 0      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 8.2
(-2.8)
A 		35.4
(3)
A 		10.6
(-2.3)
A 		7.4
(-3)
A 		28
B 19.7
(3)
A 		6
(-3)
A 		11.1
(-0.8)
A 		11
(-0.8)
A 		14
C 18.7
(-0.7)
A 		6.2
(-3)
A 		38.6
(3)
A 		26.7
(0.8)
A 		32
avr 15.5
(-2.4) 		15.9
(-1.9) 		20.1
(3) 		15
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 5.6
(-2.6)
A 		19.1
(-0.1)
A 		3.3
(-3)
A 		4
(-2.9)
A 		10.6
(-1.6)
A 		35.5
(3)
A 		32
B 21.7
(2.1)
A 		25
(3)
A 		6
(-2)
A 		2.3
(-3)
A 		5.2
(-2.2)
A 		6.5
(-1.9)
A 		23
C 2.7
(-2.8)
A 		14.6
(-0.6)
A 		18.1
(-0)
A 		5.3
(-2.3)
A 		35
(3)
A 		1.4
(-3)
A 		34
avr 10
(-0.7) 		19.6
(3) 		9.1
(-1) 		3.9
(-3) 		16.9
(2) 		14.5
(1.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3
(-1.3)
A 		7.7
(3)
A 		2.8
(-1.5)
A 		1.1
(-3)
A 		7
B 6.3
(3)
A 		1.5
(-3)
A 		2.6
(-1.6)
A 		2.3
(-2)
A 		5
C 6.2
(-0.7)
A 		1.8
(-3)
A 		13.5
(3)
A 		4.5
(-1.6)
A 		12
avr 5.2
(1.2) 		3.7
(-1.2) 		6.3
(3) 		2.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1
(-2.8)
A 		6.8
(1.6)
A 		0.7
(-3)
A 		1
(-2.8)
A 		3.2
(-1.1)
A 		8.6
(3)
A 		8
B 7.6
(2.5)
A 		8.3
(3)
A 		1.5
(-2.3)
A 		0.6
(-3)
A 		2.1
(-1.8)
A 		2.4
(-1.6)
A 		8
C 1
(-2.7)
A 		4.5
(-0.8)
A 		4.6
(-0.7)
A 		1.1
(-2.7)
A 		11.3
(3)
A 		0.5
(-3)
A 		11
avr 3.2
(-0.5) 		6.5
(3) 		2.3
(-1.5) 		0.9
(-3) 		5.5
(1.9) 		3.8
(0.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22064
Sequence Type Exemplar sequence
Representative Public ID C58944 NCBI
Target Description C58944_rc /REP_DB=TREMBL Accession /GB=C58944 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk383h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077056 NCBI Caenorhabditis elegans F18E9.7 (F18E9.7) mRNA, complete cds. 11/11 A 
F18E9.7 ENSEMBL cdna:known chromosome:CEL140:X:8595090:8597685:-1 gene:F18E9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8595126-8595976(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18E9.7
Entrez Gene 181113 Entrez gene
SwissProt Q19570 EMBL-EBI
WormBase CE28823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68812 Hypothetical protein F18E9.7 [Caenorhabditis elegans] ref|NP_509457.1| F18E9.7 [Caenorhabditis elegans] 0.0
blast CAE74846 Hypothetical protein CBG22692 [Caenorhabditis briggsae] 3.0E-71
blast CAE69416 Hypothetical protein CBG15579 [Caenorhabditis briggsae] 1.0E-70
Sequence
Target Sequence 
>C. ELEGANS:174488_AT
gtcaagctagagggtgtgtttcaacgtcacagttgcgagcacaatggactcaccgcggaa
ggacggaacacgatacacgcatcacgaaaatctcagtttataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAGCTAGAGGGTGTGTTTCAAC 305 463 160 Antisense
GAGGGTGTGTTTCAACGTCACAGTT 652 401 169 Antisense
GTTTCAACGTCACAGTTGCGAGCAC 504 449 177 Antisense
GTTGCGAGCACAATGGACTCACCGC 613 439 191 Antisense
TGCGAGCACAATGGACTCACCGCGG 591 581 193 Antisense
CAATGGACTCACCGCGGAAGGACGG 54 183 201 Antisense
GACTCACCGCGGAAGGACGGAACAC 370 373 206 Antisense
GGACGGAACACGATACACGCATCAC 603 523 220 Antisense
GGAACACGATACACGCATCACGAAA 297 529 224 Antisense
TACACGCATCACGAAAATCTCAGTT 483 643 233 Antisense
GCATCACGAAAATCTCAGTTTATAA 11 309 238 Antisense
Sequence Source Affymetrix Proprietary Database