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[174486_at]

Description C38669_rc /REP_DB=TREMBL Accession /GB=C38669 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496f10 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 45.9
(-1.6)
M 		34.1
(-3)
A 		54.9
(-0.5)
A 		84
(3)
A 		50
B 61.6
(-0.9)
A 		37.6
(-3)
A 		50.7
(-1.8)
M 		104.6
(3)
P 		67
C 35.4
(-3)
A 		42.8
(-2.4)
A 		104.9
(2.5)
P 		111.7
(3)
P 		76
avr 47.6
(-2.1) 		38.2
(-3) 		70.2
(0.1) 		100.1
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1184
1 2 3 4 5 6 range
A 55.2
(-3)
A 		55.9
(-3)
P 		70.1
(-2.9)
P 		165
(-2.3)
P 		817.4
(2.1)
P 		946.1
(3)
P 		891
B 45.1
(-3)
A 		63.7
(-2.9)
P 		80.6
(-2.8)
P 		234.4
(-2)
P 		703.7
(0.4)
P 		1214.4
(3)
P 		1169
C 34.6
(-3)
A 		57.2
(-2.9)
A 		50.3
(-2.9)
A 		181.6
(-2.3)
P 		563.7
(-0.3)
P 		1218.3
(3)
P 		1184
avr 45
(-3) 		58.9
(-2.9) 		67
(-2.9) 		193.7
(-2.2) 		694.9
(0.6) 		1126.3
(3) 		1081
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 16.7
(3)
M 		7.4
(-3)
A 		14.4
(1.5)
A 		12.3
(0.2)
A 		9
B 19.6
(1.8)
A 		9.3
(-3)
A 		11.7
(-1.9)
M 		22.3
(3)
P 		13
C 11.7
(-3)
A 		12.3
(-2.9)
A 		36.6
(3)
P 		18.8
(-1.3)
P 		25
avr 16
(0.4) 		9.7
(-3) 		20.9
(3) 		17.8
(1.3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 443
1 2 3 4 5 6 range
A 10.2
(-3)
A 		19.9
(-2.8)
P 		15.3
(-2.9)
P 		41.9
(-2.2)
P 		246.7
(3)
P 		230.4
(2.6)
P 		237
B 15.7
(-3)
A 		21.2
(-2.9)
P 		19.6
(-2.9)
P 		62.1
(-2.4)
P 		285.9
(0.7)
P 		452.8
(3)
P 		437
C 12.8
(-3)
A 		17.4
(-2.9)
A 		12.8
(-3)
A 		36.5
(-2.6)
P 		182.4
(-0.4)
P 		407.8
(3)
P 		395
avr 12.9
(-3) 		19.5
(-2.9) 		15.9
(-2.9) 		46.8
(-2.4) 		238.3
(0.9) 		363.7
(3) 		351
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20291
Sequence Type Exemplar sequence
Representative Public ID C38669 NCBI
Target Description C38669_rc /REP_DB=TREMBL Accession /GB=C38669 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk496f10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060127
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000008727 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9523256:9526820:-1 None
C41G7.3 ENSEMBL cdna:known chromosome:CEL140:I:9523125:9526820:-1 gene:C41G7.3 A 
SNAP00000008716 ENSEMBL cdna:SNAP chromosome:CEL140:I:9525365:9526820:-1 None
NM_060127 NCBI Caenorhabditis elegans C41G7.3 (C41G7.3) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9525161-9525440(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C41G7.3
Entrez Gene 172786 Entrez gene
SwissProt Q93367 EMBL-EBI
WormBase CE08667 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02840 Hypothetical protein C41G7.3 [Caenorhabditis elegans] ref|NP_492528.1| C41G7.3 [Caenorhabditis elegans] 0.0
blast CAE56705 Hypothetical protein CBG24491 [Caenorhabditis briggsae] 1.0E-133
blast CAE56705 Hypothetical protein CBG24491 [Caenorhabditis briggsae] 1.0E-130
blast CAE56705 Hypothetical protein CBG24491 [Caenorhabditis briggsae] 1.0E-118
blast CAE56706 Hypothetical protein CBG24492 [Caenorhabditis briggsae] 5.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR004307 EMBL-EBI TspO/MBR-related protein 1.6E-64
Pfam IPR004307 EMBL-EBI TspO/MBR-related protein 1.6E-64
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492528.1 4 435-457,470-489,494-516,523-542
C41G7.3 4 435-457,470-489,494-516,523-542
GENEFINDER00000008727 4 454-476,489-508,513-535,542-561
Sequence
Target Sequence 
>C. ELEGANS:174486_AT
gcattgacaccacgtaaactttccccgtctgattaatacctgtgatattcgttccttgtc
ccctctatatcatgcaccctatttttcttctgatatcatttttcatgtggatgccaaact
ctgtttcatttcattta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTGACACCACGTAAACTTTCCC 603 305 122 Antisense
TTTCCCCGTCTGATTAATACCTGTG 392 665 141 Antisense
TCCCCGTCTGATTAATACCTGTGAT 657 595 143 Antisense
AATACCTGTGATATTCGTTCCTTGT 588 171 156 Antisense
TCTATATCATGCACCCTATTTTTCT 362 615 185 Antisense
TATATCATGCACCCTATTTTTCTTC 642 661 187 Antisense
ATTTTTCTTCTGATATCATTTTTCA 413 15 202 Antisense
GATATCATTTTTCATGTGGATGCCA 75 427 213 Antisense
CATGTGGATGCCAAACTCTGTTTCA 548 209 225 Antisense
GGATGCCAAACTCTGTTTCATTTCA 205 511 230 Antisense
GCCAAACTCTGTTTCATTTCATTTA 206 279 234 Antisense
Sequence Source Affymetrix Proprietary Database