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[174485_at]

Description C55682_rc /REP_DB=TREMBL Accession /GB=C55682 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk207c10 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 10.2
(-0.8)
A 		25.5
(3)
A 		1.6
(-3)
A 		21.6
(2)
A 		24
B 16.3
(-0.7)
A 		39.3
(3)
P 		2.3
(-3)
A 		39.1
(3)
A 		37
C 14.5
(-2.1)
A 		30.7
(2.2)
P 		11.1
(-3)
A 		33.8
(3)
P 		23
avr 13.7
(-1.1) 		31.8
(3) 		5
(-3) 		31.5
(2.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 16.1
(-0.6)
A 		18.3
(0)
A 		29.5
(3)
P 		10.5
(-2.1)
A 		25.5
(1.9)
A 		7
(-3)
A 		23
B 6.3
(-2.1)
A 		22.3
(1.9)
M 		2.5
(-3)
A 		26.9
(3)
A 		3.5
(-2.8)
A 		11.1
(-0.9)
A 		24
C 2
(-3)
A 		7.2
(-1.2)
A 		6.3
(-1.5)
A 		8.8
(-0.7)
A 		3.8
(-2.4)
A 		19.5
(3)
A 		18
avr 8.1
(-3) 		15.9
(3) 		12.8
(0.6) 		15.4
(2.6) 		10.9
(-0.8) 		12.5
(0.4) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.7
(0.9)
A 		5.5
(3)
A 		0.4
(-3)
A 		3.2
(0.3)
A 		5
B 5.2
(0.1)
A 		9.7
(3)
P 		0.5
(-3)
A 		8.3
(2.1)
A 		9
C 4.8
(-1.9)
A 		8.8
(3)
P 		3.9
(-3)
A 		5.7
(-0.8)
P 		5
avr 4.6
(-0.2) 		8
(3) 		1.6
(-3) 		5.7
(0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 3
(-1.7)
A 		6.5
(1.8)
A 		6.4
(1.7)
P 		2.7
(-2)
A 		7.7
(3)
A 		1.7
(-3)
A 		6
B 2.2
(-1.6)
A 		7.4
(3)
M 		0.6
(-3)
A 		7.1
(2.7)
A 		1.4
(-2.3)
A 		4.1
(0.1)
A 		7
C 0.7
(-3)
A 		2.2
(-1.4)
A 		1.6
(-2.1)
A 		1.8
(-1.9)
A 		1.2
(-2.5)
A 		6.5
(3)
A 		6
avr 2
(-3) 		5.4
(3) 		2.9
(-1.4) 		3.9
(0.4) 		3.4
(-0.5) 		4.1
(0.7) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20129
Sequence Type Exemplar sequence
Representative Public ID C55682 NCBI
Target Description C55682_rc /REP_DB=TREMBL Accession /GB=C55682 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk207c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C55682
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C55682 C55682_rc /REP_DB=TREMBL Accession /GB=C55682 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk207c10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4459416-4459696(+) 100.0 100.0
chrI:4456583-4456863(+) 100.0 100.0
chrI:10310774-10311055(+) 99.29 99.29
chrI:13093346-13093671(+) 97.5 97.5
chrI:10327223-10327504(-) 99.29 99.29
chrI:13110323-13110648(-) 97.5 97.5
Sequence
Target Sequence 
>C. ELEGANS:174485_AT
taaacttttagttacatttactcatttttcaaaatcttaaaaagtaaccatttttaccta
tatcaaaaatttcaaaaatctaaaacataaaaaataccccctgctttcaccttcaccaaa
aatttttcataatcatcatatacaagccaactgataagactccccacttcttaaccaact
ccaagaatttcttatcagcttctatcatagtcaagtggtagtgtgcctgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACTTTTAGTTACATTTACTCAT 235 627 28 Antisense
TACATTTACTCATTTTTCAAAATCT 676 643 40 Antisense
CTGCTTTCACCTTCACCAAAAATTT 370 235 128 Antisense
TCATAATCATCATATACAAGCCAAC 256 621 154 Antisense
ACAAGCCAACTGATAAGACTCCCCA 252 111 169 Antisense
CCACTTCTTAACCAACTCCAAGAAT 230 275 191 Antisense
TTAACCAACTCCAAGAATTTCTTAT 15 685 198 Antisense
GAATTTCTTATCAGCTTCTATCATA 593 325 212 Antisense
TTCTTATCAGCTTCTATCATAGTCA 301 691 216 Antisense
ATCAGCTTCTATCATAGTCAAGTGG 211 29 221 Antisense
AGTCAAGTGGTAGTGTGCCTGTCTT 549 61 236 Antisense
Sequence Source Affymetrix Proprietary Database