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[174484_s_at]

Description C56447_rc /REP_DB=TREMBL Accession /GB=C56447 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261h11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_highest_8_8 > 63      4grp_high_8_8 > 19      6grp_highest_nonorm > 88      6grp_total > 58      4grp_total > 28      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 739
1 2 3 4 range
A 1013.1
(-1.1)
P 		1329
(3)
P 		869.8
(-3)
P 		1149.3
(0.7)
P 		459
B 1502.1
(3)
P 		1069.1
(-0.5)
P 		763.4
(-3)
P 		1342
(1.7)
P 		739
C 1100
(-1.9)
P 		1071.6
(-2.3)
P 		1025.9
(-3)
P 		1432
(3)
P 		406
avr 1205.1
(1.5) 		1156.6
(0.8) 		886.4
(-3) 		1307.8
(3) 		421

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1441
1 2 3 4 5 6 range
A 1876.4
(3)
P 		934.8
(-2.9)
P 		1058.1
(-2.2)
P 		923.5
(-3)
P 		1351.4
(-0.3)
P 		1387.9
(-0.1)
P 		953
B 1100.7
(-1.7)
P 		1399.5
(-0.3)
P 		839.1
(-3)
P 		1377.1
(-0.4)
P 		1035.4
(-2.1)
P 		2092.7
(3)
P 		1254
C 960.7
(-2.7)
P 		1171.1
(-1.8)
P 		886
(-3)
P 		1554.8
(-0.1)
P 		981
(-2.6)
P 		2280.2
(3)
P 		1394
avr 1312.6
(-0.7) 		1168.5
(-1.5) 		927.7
(-3) 		1285.1
(-0.8) 		1122.6
(-1.8) 		1920.3
(3) 		993
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 311
1 2 3 4 range
A 368.9
(3)
P 		288.5
(0.6)
P 		227.4
(-1.2)
P 		168.2
(-3)
P 		201
B 479
(3)
P 		264.1
(-1.3)
P 		176.9
(-3)
P 		286
(-0.8)
P 		302
C 364.1
(3)
P 		308.1
(0.3)
P 		357.6
(2.7)
P 		241.5
(-3)
P 		123
avr 404
(3) 		286.9
(-1.1) 		254
(-2.2) 		231.9
(-3) 		172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 345.9
(0.9)
P 		332.5
(0.5)
P 		230.4
(-3)
P 		234.2
(-2.9)
P 		407.8
(3)
P 		337.9
(0.6)
P 		177
B 383
(-1.1)
P 		465.8
(-0.3)
P 		203.7
(-3)
P 		364.7
(-1.3)
P 		420.7
(-0.7)
P 		780.4
(3)
P 		577
C 356.1
(-1.5)
P 		357.3
(-1.5)
P 		225.5
(-3)
P 		312.7
(-2)
P 		317.4
(-2)
P 		763.3
(3)
P 		538
avr 361.7
(-0.9) 		385.2
(-0.6) 		219.9
(-3) 		303.9
(-1.8) 		382
(-0.6) 		627.2
(3) 		407
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174484_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21451
Sequence Type Exemplar sequence
Representative Public ID C56447 NCBI
Target Description C56447_rc /REP_DB=TREMBL Accession /GB=C56447 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk261h11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070015 NCBI Caenorhabditis elegans Y55D9A.1b (Y55D9A.1) mRNA, complete cds. 11/11 None
Y55D9A.1b ENSEMBL cdna:known chromosome:CEL140:IV:12605667:12614690:-1 gene:Y55D9A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178217 2 1 NM_070015 174484_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12605702-12606037(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y55D9A.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70120 Hypothetical protein Y55D9A.1b [Caenorhabditis elegans] ref|NP_502416.1| Y55D9A.1b [Caenorhabditis elegans] 0.0
blast CAA21701 Hypothetical protein Y55D9A.1a [Caenorhabditis elegans] ref|NP_502417.1| Y55D9A.1a [Caenorhabditis elegans] 0.0
blast CAE67919 Hypothetical protein CBG13517 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000904 EMBL-EBI SEC7-like domain 4.4E-32
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.3E-15
Sequence
Target Sequence 
>C. ELEGANS:174484_S_AT
ttttgattattatcgatcccccttccccctatctttctcttaaaacggtgttcatttctt
tattgagtcgaaatttttctcgatcgaaaccccaacatttgggatattatttaagtgctt
atttagctctattccctgtgaataaaaattgtatttctttcgaaaaaataatcatttcct
ccctattgttttttagtttaagtatttagccgattccctgtgaatattagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGATTATTATCGATCCCCCTTC 108 677 18 Antisense
ATCTTTCTCTTAAAACGGTGTTCAT 519 31 48 Antisense
GGTGTTCATTTCTTTATTGAGTCGA 68 501 64 Antisense
TTGAGTCGAAATTTTTCTCGATCGA 620 701 80 Antisense
TTTTCTCGATCGAAACCCCAACATT 43 677 92 Antisense
AGTGCTTATTTAGCTCTATTCCCTG 203 61 131 Antisense
TTATTTAGCTCTATTCCCTGTGAAT 687 677 136 Antisense
AAATAATCATTTCCTCCCTATTGTT 341 117 183 Antisense
TCATTTCCTCCCTATTGTTTTTTAG 677 619 189 Antisense
TAAGTATTTAGCCGATTCCCTGTGA 429 637 216 Antisense
AGCCGATTCCCTGTGAATATTAGGA 60 83 225 Antisense
Sequence Source Affymetrix Proprietary Database