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[174483_at]

Description CEC5594_rc /REP_DB=TREMBL Accession /GB=C11559 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk183c1 : 3prime end, single read.
Cluster 6grp_total > 99      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 23.1
(-2.2)
A 		13.1
(-3)
A 		18.7
(-2.6)
A 		90.2
(3)
P 		77
B 29.8
(-0.5)
A 		42.5
(1.1)
A 		8.7
(-3)
A 		58.7
(3)
A 		50
C 17.6
(-2.4)
A 		1.4
(-3)
A 		17.1
(-2.4)
A 		151.7
(3)
A 		150
avr 23.5
(-2.4) 		19
(-2.7) 		14.8
(-3) 		100.2
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 8.5
(-3)
A 		18.9
(-2.4)
A 		67.3
(0.5)
A 		19.4
(-2.3)
A 		109.1
(3)
A 		31.2
(-1.6)
A 		101
B 31.8
(-1.2)
A 		42
(-0.4)
A 		15.4
(-2.3)
A 		6.1
(-3)
A 		74.5
(1.9)
A 		90.5
(3)
P 		84
C 1.4
(-3)
A 		62.6
(0.9)
A 		48.9
(-0)
A 		7.9
(-2.6)
A 		53.2
(0.3)
A 		96.5
(3)
P 		95
avr 13.9
(-2.8) 		41.2
(-0.3) 		43.9
(-0.1) 		11.1
(-3) 		78.9
(3) 		72.7
(2.5) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 8.4
(0.2)
A 		2.8
(-3)
A 		4.9
(-1.8)
A 		13.2
(3)
P 		10
B 9.5
(1.3)
A 		10.5
(1.9)
A 		2
(-3)
A 		12.5
(3)
A 		11
C 5.8
(-1.7)
A 		0.4
(-3)
A 		6
(-1.7)
A 		25.6
(3)
A 		25
avr 7.9
(-1.3) 		4.6
(-2.9) 		4.3
(-3) 		17.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 1.6
(-3)
A 		6.7
(-2)
A 		14.7
(-0.5)
A 		4.9
(-2.4)
A 		32.9
(3)
A 		7.6
(-1.8)
A 		31
B 11.1
(-1.2)
A 		14
(-0.7)
A 		3.7
(-2.6)
A 		1.6
(-3)
A 		30.3
(2.3)
A 		33.8
(3)
P 		32
C 0.5
(-3)
A 		19.1
(0.5)
A 		12.5
(-0.7)
A 		1.6
(-2.8)
A 		17.2
(0.2)
A 		32.3
(3)
P 		32
avr 4.4
(-2.6) 		13.3
(-0.4) 		10.3
(-1.1) 		2.7
(-3) 		26.8
(3) 		24.6
(2.5) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174483_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21343
Sequence Type Exemplar sequence
Representative Public ID CEC5594 NCBI
Target Description CEC5594_rc /REP_DB=TREMBL Accession /GB=C11559 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk183c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) CEC5594
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
CEC5594 CEC5594_rc /REP_DB=TREMBL Accession /GB=C11559 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk183c1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069237 11/11 Negative Strand Matching Probes A 
GENEFINDER00000032717 11/11 Negative Strand Matching Probes None
F49C12.15 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9324604-9324884(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174483_AT
gcagatctagtacgagcaaggcggatttgttggttcattgtcgatcggcttctgcttcgg
cttctacttctggaacgagaagatgcagtagactgagcacttcggatagcactattcaca
atagcctgacgtcgaagatcagctgatccacgtcgagcacgttttgggttctcaacttca
ctgataattgtgatctttctttttgtatccttctcaagtttgattgtaatctctgctggt
ggctgatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGATCTAGTACGAGCAAGGCGGA 634 311 13 Antisense
GAGCAAGGCGGATTTGTTGGTTCAT 77 391 26 Antisense
TTGTTGGTTCATTGTCGATCGGCTT 555 703 39 Antisense
TTCGGCTTCTACTTCTGGAACGAGA 293 693 68 Antisense
GACTGAGCACTTCGGATAGCACTAT 296 375 103 Antisense
GCACTATTCACAATAGCCTGACGTC 242 317 121 Antisense
GCCTGACGTCGAAGATCAGCTGATC 644 281 136 Antisense
GATCCACGTCGAGCACGTTTTGGGT 430 415 157 Antisense
CGTTTTGGGTTCTCAACTTCACTGA 438 237 172 Antisense
TGATCTTTCTTTTTGTATCCTTCTC 305 565 203 Antisense
TGTAATCTCTGCTGGTGGCTGATCA 528 559 237 Antisense
Sequence Source Affymetrix Proprietary Database