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[174482_at]

Description CEK009A6R_rc /REP_DB=TREMBL Accession /GB=D27167 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9a6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 21      6grp_total > 02      4grp_total > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 830
1 2 3 4 range
A 1520.8
(3)
P 		968.7
(-1.1)
P 		1044.4
(-0.5)
P 		713.2
(-3)
P 		808
B 1083.9
(1.6)
P 		1030.2
(-0)
P 		930.6
(-3)
P 		1132
(3)
P 		201
C 1163.5
(3)
P 		939.4
(0.2)
P 		823.2
(-1.3)
P 		690.8
(-3)
P 		473
avr 1256.1
(3) 		979.4
(-1) 		932.7
(-1.7) 		845.3
(-3) 		411

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1025
1 2 3 4 5 6 range
A 1422.6
(0.3)
P 		1626.3
(1.7)
P 		968.2
(-2.7)
P 		917.7
(-3)
P 		1827.2
(3)
P 		1349.4
(-0.2)
P 		910
B 1358.2
(1)
P 		1511
(3)
P 		1042.6
(-3)
P 		1089.4
(-2.4)
P 		1054.7
(-2.8)
P 		1058.5
(-2.8)
P 		468
C 1449.5
(3)
P 		1350.7
(2.1)
P 		968.8
(-1.5)
P 		1055.6
(-0.7)
P 		1111.1
(-0.1)
P 		802
(-3)
P 		648
avr 1410.1
(2) 		1496
(3) 		993.2
(-3) 		1020.9
(-2.7) 		1331
(1) 		1070
(-2.1) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 553.7
(3)
P 		210.3
(-1.6)
P 		273
(-0.7)
P 		104.4
(-3)
P 		449
B 345.6
(3)
P 		254.4
(-1.2)
P 		215.6
(-3)
P 		241.2
(-1.8)
P 		130
C 385.2
(3)
P 		270.1
(0.4)
P 		286.9
(0.8)
P 		116.5
(-3)
P 		269
avr 428.2
(3) 		244.9
(-1) 		258.5
(-0.7) 		154
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 368
1 2 3 4 5 6 range
A 262.2
(-2.2)
P 		578.4
(3)
P 		210.8
(-3)
P 		232.7
(-2.6)
P 		551.4
(2.6)
P 		328.5
(-1.1)
P 		368
B 472.6
(2.3)
P 		502.9
(3)
P 		253.2
(-3)
P 		288.5
(-2.2)
P 		428.5
(1.2)
P 		394.7
(0.4)
P 		250
C 537.3
(3)
P 		412.1
(0.7)
P 		246.6
(-2.4)
P 		212.3
(-3)
P 		359.5
(-0.3)
P 		268.5
(-2)
P 		325
avr 424
(1.3) 		497.8
(3) 		236.9
(-3) 		244.5
(-2.8) 		446.5
(1.8) 		330.6
(-0.8) 		261
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21516
Sequence Type Exemplar sequence
Representative Public ID CEK009A6R NCBI
Target Description CEK009A6R_rc /REP_DB=TREMBL Accession /GB=D27167 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk9a6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068318 NCBI Caenorhabditis elegans C02B10.5 (C02B10.5) mRNA, complete cds. 11/11 None
C02B10.5.3 ENSEMBL cdna:known chromosome:CEL140:IV:5083291:5086877:1 gene:C02B10.5 11/11 None
C02B10.5.1 ENSEMBL cdna:known chromosome:CEL140:IV:5083293:5086877:1 gene:C02B10.5 11/11 A 
C02B10.5.2 ENSEMBL cdna:known chromosome:CEL140:IV:5083320:5086877:1 gene:C02B10.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5086489-5086854(+) 98.08 100.0
Public Domain and Genome References
Gene Title
Ensembl C02B10.5
Entrez Gene 177280 Entrez gene
SwissProt O44447 EMBL-EBI
WormBase CE16802 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92020 Hypothetical protein C02B10.5 [Caenorhabditis elegans] ref|NP_500719.1| C02B10.5 [Caenorhabditis elegans] 1.0E-172
blast CAE72736 Hypothetical protein CBG19977 [Caenorhabditis briggsae] 5.0E-79
Sequence
Target Sequence 
>C. ELEGANS:174482_AT
taagctcatccggatagtttccccttgtccccaaattgctttagtccccctatcccacag
ccgttctagatctgcctaagctaccgcaaaattctcaatagattgagaagatgcaatttt
aggtttgaactcagctctaccttcccatcacccaccaaaatcctcaccatttgtatttta
ccggtatcaacaagtttctccattctcttccattcgcacagatacacaaaatgattcttc
tctatactgagcttttccttctttgaactttttctcatcaaaattgccctgtattttatg
tttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGCTCATCCGGATAGTTTCCCCT 696 637 29 Antisense
CAGCCGTTCTAGATCTGCCTAAGCT 11 201 86 Antisense
CTAAGCTACCGCAAAATTCTCAATA 246 227 104 Antisense
TAGGTTTGAACTCAGCTCTACCTTC 213 651 148 Antisense
AATCCTCACCATTTGTATTTTACCG 490 167 187 Antisense
ATCAACAAGTTTCTCCATTCTCTTC 554 27 214 Antisense
ATTCTCTTCCATTCGCACAGATACA 361 11 230 Antisense
GATTCTTCTCTATACTGAGCTTTTC 562 429 261 Antisense
TCCTTCTTTGAACTTTTTCTCATCA 648 591 284 Antisense
CTTTTTCTCATCAAAATTGCCCTGT 354 223 296 Antisense
ATTGCCCTGTATTTTATGTTTCATT 496 7 311 Antisense
Sequence Source Affymetrix Proprietary Database