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[174481_at]

Description C52424_rc /REP_DB=TREMBL Accession /GB=C52424 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk248f11 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 33      6grp_total > 30      4grp_total > 54      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 73.4
(1.5)
A 		31.8
(-3)
A 		87.7
(3)
A 		49.1
(-1.1)
A 		56
B 65.3
(-1)
M 		107.4
(3)
A 		43.5
(-3)
A 		52.1
(-2.2)
A 		64
C 120.7
(3)
P 		87.4
(-3)
A 		87.9
(-2.9)
A 		101.8
(-0.4)
M 		33
avr 86.5
(3) 		75.5
(-0.5) 		73
(-1.3) 		67.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 36.2
(-3)
A 		127.2
(2.6)
A 		94.6
(0.6)
P 		101.6
(1)
P 		133.1
(3)
P 		51.1
(-2.1)
A 		97
B 111.9
(-0.2)
P 		117.8
(0.2)
P 		148.7
(2.7)
P 		152.9
(3)
P 		109.6
(-0.4)
M 		76.4
(-3)
P 		77
C 118
(-1.2)
A 		265.2
(3)
P 		97.8
(-1.8)
A 		235.5
(2.1)
M 		80
(-2.3)
A 		57
(-3)
A 		208
avr 88.7
(-1.5) 		170.1
(3) 		113.7
(-0.1) 		163.3
(2.6) 		107.6
(-0.5) 		61.5
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 26.7
(3)
A 		6.9
(-3)
A 		22.9
(1.8)
A 		7.2
(-2.9)
A 		20
B 20.8
(0.9)
M 		26.5
(3)
A 		10.1
(-3)
A 		11.1
(-2.6)
A 		16
C 39.9
(3)
P 		25.1
(-0.9)
A 		30.6
(0.5)
A 		17.2
(-3)
M 		23
avr 29.1
(3) 		19.5
(-0.3) 		21.2
(0.3) 		11.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 6.7
(-3)
A 		45.2
(3)
A 		20.6
(-0.8)
P 		25.8
(-0)
P 		40.2
(2.2)
P 		12.4
(-2.1)
A 		39
B 38.9
(0.9)
P 		39.2
(1)
P 		36.1
(-0.1)
P 		40.5
(1.5)
P 		44.5
(3)
M 		28.5
(-3)
P 		16
C 43.7
(-0.6)
A 		80.9
(3)
P 		24.9
(-2.4)
A 		47.4
(-0.3)
M 		25.9
(-2.3)
A 		19.1
(-3)
A 		62
avr 29.8
(-1.3) 		55.1
(3) 		27.2
(-1.8) 		37.9
(0.1) 		36.9
(-0.1) 		20
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21131
Sequence Type Exemplar sequence
Representative Public ID C52424 NCBI
Target Description C52424_rc /REP_DB=TREMBL Accession /GB=C52424 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk248f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171110(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171110 NCBI Caenorhabditis elegans C45G9.6a (C45G9.6) mRNA, complete cds. 11/11 A 
SNAP00000017851 ENSEMBL cdna:SNAP chromosome:CEL140:III:5036680:5040250:1 9/11 None
C45G9.6a ENSEMBL cdna:known chromosome:CEL140:III:5036680:5040363:1 gene:C45G9.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175684 2 1 NM_171110 174481_at (11), 187424_s_at (9)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5039661-5040293(+) 100.0 100.0
Public Domain and Genome References
Ensembl C45G9.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741124 C45G9.6a [Caenorhabditis elegans] gb|AAM22050.1| Hypothetical protein C45G9.6a [Caenorhabditis elegans] sp|Q09279|YQI6_CAEEL Hypothetical protein C45G9.6 in chromosome III 0.0
blast A88448 protein C45G9.6 [imported] - Caenorhabditis elegans 0.0
blast CAE75112 Hypothetical protein CBG23037 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174481_AT
ccattccaacaggtgtgccgtcaatcaggaggagtatcattgtgtgtcgatgtgtccatt
gcgagaaaccctgcattactccatgaacgtctttggcgattcttacgcaatttcatcttg
cggacactttaacggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATTCCAACAGGTGTGCCGTCAAT 7 271 117 Antisense
AGGTGTGCCGTCAATCAGGAGGAGT 320 57 127 Antisense
CAGGAGGAGTATCATTGTGTGTCGA 256 207 142 Antisense
ATTGTGTGTCGATGTGTCCATTGCG 285 5 155 Antisense
GATGTGTCCATTGCGAGAAACCCTG 591 407 165 Antisense
TGCGAGAAACCCTGCATTACTCCAT 55 585 176 Antisense
CCTGCATTACTCCATGAACGTCTTT 301 267 186 Antisense
GAACGTCTTTGGCGATTCTTACGCA 116 347 201 Antisense
GGCGATTCTTACGCAATTTCATCTT 169 541 211 Antisense
AATTTCATCTTGCGGACACTTTAAC 312 173 225 Antisense
CATCTTGCGGACACTTTAACGGTTT 615 195 230 Antisense
Sequence Source Affymetrix Proprietary Database