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[174480_at] ATP synthase complex f subunit like protein

Description C57200_rc /REP_DB=TREMBL Accession /GB=C57200 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300d10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 61      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 29      6grp_total > 61      4grp_total > 59      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7362
1 2 3 4 range
A 11691.6
(0.7)
P 		14535.1
(3)
P 		13176.9
(1.9)
P 		7172.7
(-3)
P 		7362
B 11722.9
(0.5)
P 		11713.6
(0.5)
P 		13417.2
(3)
P 		9388
(-3)
P 		4029
C 10776.2
(1.7)
P 		10754.7
(1.7)
P 		11338.1
(3)
P 		8649.6
(-3)
P 		2689
avr 11396.9
(1.2) 		12334.5
(2.6) 		12644.1
(3) 		8403.4
(-3) 		4241

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7968
1 2 3 4 5 6 range
A 11567.5
(-1)
P 		12531.4
(0.2)
P 		13833.1
(1.9)
P 		14735.7
(3)
P 		10005.5
(-3)
P 		11684.7
(-0.9)
P 		4730
B 10078.6
(-0.7)
P 		10283.8
(-0.4)
P 		12972.5
(3)
P 		11222.1
(0.8)
P 		9838.4
(-1)
P 		8267.5
(-3)
P 		4705
C 12445.3
(-0.2)
P 		9839.6
(-2.4)
P 		15547.2
(2.4)
P 		16235.9
(3)
P 		12496.1
(-0.2)
P 		9169.2
(-3)
P 		7067
avr 11363.8
(-0.7) 		10884.9
(-1.4) 		14117.6
(3) 		14064.6
(2.9) 		10780
(-1.5) 		9707.1
(-3) 		4411
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3207
1 2 3 4 range
A 4256.9
(3)
P 		3155.2
(0.9)
P 		3444.7
(1.5)
P 		1049.9
(-3)
P 		3207
B 3738.3
(3)
P 		2893
(0.1)
P 		3109.1
(0.8)
P 		2000.6
(-3)
P 		1738
C 3567.2
(2.1)
P 		3092
(0.9)
P 		3951.7
(3)
P 		1458.5
(-3)
P 		2493
avr 3854.1
(3) 		3046.7
(0.9) 		3501.8
(2.1) 		1503
(-3) 		2351

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2481
1 2 3 4 5 6 range
A 2132.4
(-3)
P 		4456.8
(3)
P 		3012.6
(-0.7)
P 		3737.3
(1.1)
P 		3019.2
(-0.7)
P 		2844.9
(-1.2)
P 		2324
B 3506.9
(0.1)
P 		3423
(-0.4)
P 		3150.1
(-2)
P 		2972.3
(-3)
P 		3997.2
(3)
P 		3082.9
(-2.4)
P 		1025
C 4612.9
(3)
P 		3002.4
(-3)
P 		3957
(0.6)
P 		3265
(-2)
P 		4043.6
(0.9)
P 		3069.5
(-2.8)
P 		1611
avr 3417.4
(0.7) 		3627.4
(2.5) 		3373.2
(0.3) 		3324.9
(-0.2) 		3686.7
(3) 		2999.1
(-3) 		688
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20553
Sequence Type Exemplar sequence
Representative Public ID C57200 NCBI
Target Description C57200_rc /REP_DB=TREMBL Accession /GB=C57200 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk300d10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063751(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063751 NCBI Caenorhabditis elegans R53.4 (R53.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040708 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9963074:9967958:-1 11/11 None
R53.4.1 ENSEMBL cdna:known chromosome:CEL140:II:9967182:9967964:-1 gene:R53.4 11/11 A 
R53.4.2 ENSEMBL cdna:known chromosome:CEL140:II:9967182:9967960:-1 gene:R53.4 11/11 A 
R53.4.3 ENSEMBL cdna:known chromosome:CEL140:II:9967199:9967962:-1 gene:R53.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9967260-9967491(-) 97.84 100.0
Public Domain and Genome References
Gene Title ATP synthase complex f subunit like protein
Ensembl R53.4
Entrez Gene 174554 Entrez gene
SwissProt Q22021 EMBL-EBI
WormBase CE03574 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91347 Hypothetical protein R53.2 [Caenorhabditis elegans] ref|NP_496151.1| R53.2 [Caenorhabditis elegans] sp|Q22018|DTYMK_CAEEL Probable thymidylate kinase (dTMP kinase) 1.0E-116
blast CAA91350 Hypothetical protein R53.4 [Caenorhabditis elegans] ref|NP_496152.1| R53.4 [Caenorhabditis elegans] sp|Q22021|ATPK_CAEEL Putative ATP synthase f chain, mitochondrial 4.0E-93
blast CAE57948 Hypothetical protein CBG01005 [Caenorhabditis briggsae] 6.0E-91
blast CAE57949 Hypothetical protein CBG01006 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000062 EMBL-EBI Thymidylate kinase 5.2E-79
Sequence
Target Sequence 
>C. ELEGANS:174480_AT
gtaccattggtagacaccatccgatttcgtctactcttcaaagctccacatacaaactct
gtcgctgggggaggacgaaacagccatccgattttttcgtattctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCATTGGTAGACACCATCCGAT 246 457 108 Antisense
TTGGTAGACACCATCCGATTTCGTC 586 707 114 Antisense
TAGACACCATCCGATTTCGTCTACT 229 653 118 Antisense
TCTACTCTTCAAAGCTCCACATACA 80 615 137 Antisense
ACTCTTCAAAGCTCCACATACAAAC 238 101 140 Antisense
CTCCACATACAAACTCTGTCGCTGG 227 237 151 Antisense
ACATACAAACTCTGTCGCTGGGGGA 593 99 155 Antisense
AAACTCTGTCGCTGGGGGAGGACGA 35 63 161 Antisense
GGGGGAGGACGAAACAGCCATCCGA 7 319 174 Antisense
AGGACGAAACAGCCATCCGATTTTT 559 55 179 Antisense
AGCCATCCGATTTTTTCGTATTCTT 114 83 189 Antisense
Sequence Source Affymetrix Proprietary Database