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[174479_at]

Description CEC4234_rc /REP_DB=TREMBL Accession /GB=C11423 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk177f9 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 86      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_total > 77      4grp_total > 06      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 134.9
(2)
P
71.8
(-3)
P
107.2
(-0.2)
P
146.9
(3)
P
75
B 124.1
(0.6)
P
91.2
(-3)
P
104.4
(-1.6)
P
146.3
(3)
P
55
C 110.3
(-0.5)
P
101.1
(-1.4)
P
83.4
(-3)
P
148.2
(3)
P
65
avr 123.1
(0.6)
88
(-3)
98.3
(-2)
147.1
(3)
59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 97.7
(-2.5)
P
84.9
(-3)
P
130.4
(-1.1)
P
116.2
(-1.7)
P
146.7
(-0.4)
P
229.4
(3)
P
145
B 93.7
(-3)
P
95.1
(-3)
P
144.8
(-1.7)
P
101.2
(-2.8)
P
171.9
(-1)
P
328
(3)
P
234
C 66.5
(-3)
P
69.3
(-2.9)
P
71.2
(-2.8)
A
104.4
(-1.7)
P
124.8
(-1)
P
241.8
(3)
P
175
avr 86
(-2.9)
83.1
(-3)
115.5
(-1.9)
107.3
(-2.2)
147.8
(-0.9)
266.4
(3)
183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 49.1
(3)
P
15.6
(-3)
P
28
(-0.8)
P
21.5
(-1.9)
P
34
B 39.6
(3)
P
22.5
(-3)
P
24.2
(-2.4)
P
31.2
(0.1)
P
17
C 36.5
(3)
P
29.1
(-0.9)
P
29.1
(-0.9)
P
25
(-3)
P
12
avr 41.7
(3)
22.4
(-3)
27.1
(-1.5)
25.9
(-1.9)
19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 18
(-3)
P
30.2
(-1.1)
P
28.4
(-1.3)
P
29.5
(-1.2)
P
44.3
(1.2)
P
55.8
(3)
P
38
B 32.6
(-2.6)
P
31.6
(-2.7)
P
35.2
(-2.5)
P
26.8
(-3)
P
69.8
(-0.3)
P
122.3
(3)
P
96
C 24.7
(-2.4)
P
21.1
(-2.7)
P
18.1
(-3)
A
21
(-2.7)
P
40.4
(-0.9)
P
81
(3)
P
63
avr 25.1
(-3)
27.6
(-2.8)
27.2
(-2.8)
25.8
(-2.9)
51.5
(-0.4)
86.4
(3)
61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21804
Sequence Type Exemplar sequence
Representative Public ID CEC4234 NCBI
Target Description CEC4234_rc /REP_DB=TREMBL Accession /GB=C11423 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk177f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182371
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
Y113G7B.25 ENSEMBL cdna:known chromosome:CEL140:V:20248878:20250053:-1 gene:Y113G7B.25 None
SNAP00000024716 ENSEMBL cdna:SNAP chromosome:CEL140:V:20233271:20256921:-1 None
NM_182371 NCBI Caenorhabditis elegans Y113G7B.25 (Y113G7B.25) mRNA, complete cds. None
GENEFINDER00000024722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20237856:20265280:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20248887-20250195(-) 91.01 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.25
Entrez Gene 3565101 Entrez gene
SwissProt Q8I4E9 EMBL-EBI
WormBase CE32006 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54337 Hypothetical protein Y113G7B.23 [Caenorhabditis elegans] ref|NP_507906.1| Phasmid Socket Absent family member (psa-1) [Caenorhabditis elegans] gb|AAG16654.1| SWI3-like protein; PSA-1 [Caenorhabditis elegans] 0.0
blast CAE67424 Hypothetical protein CBG12912 [Caenorhabditis briggsae] 0.0
blast XP_393008 PREDICTED: similar to ENSANGP00000027316 [Apis mellifera] 1.0E-139
blast CAB54337 Hypothetical protein Y113G7B.23 [Caenorhabditis elegans] ref|NP_507906.1| Phasmid Socket Absent family member (psa-1) [Caenorhabditis elegans] gb|AAG16654.1| SWI3-like protein; PSA-1 [Caenorhabditis elegans] 1.0E-138
blast CAB76740 Hypothetical protein Y113G7B.18 [Caenorhabditis elegans] ref|NP_507908.1| MeDiaTor family member (mdt-17) [Caenorhabditis elegans] 1.0E-130
blast CAE67424 Hypothetical protein CBG12912 [Caenorhabditis briggsae] 1.0E-117
blast CAD54161 Hypothetical protein Y113G7B.25 [Caenorhabditis elegans] ref|NP_872171.1| Y113G7B.25 [Caenorhabditis elegans] 2.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.9E-10
Pfam IPR007526 EMBL-EBI SWIRM 2.9E-42
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 3.8E-74
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 2.5E-33
Pfam IPR001888 EMBL-EBI Transposase, type 1 3.8E-8
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.6E-4
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.33
Pfam IPR007526 EMBL-EBI SWIRM 2.9E-42
Sequence
Target Sequence
>C. ELEGANS:174479_AT
gaaatccggctccaaacattgtactgtgcaatcaggcggccacccgctcgattcttttcg
tttttcacgttggaatggagccagaagtgtttgttcgacgatttattgtcaacgaggaga
cgatgaagccagaagagcacgaatggaagaagctgtgctattcgagacttcatggagcaa
cgttgtgccgcaaaatcgacgcgcttctcgtgtttttacgcgatcattgaggattttttt
gtgctgcttctatacgttcaaaatcgtccgaaccgtttttccaattttttgaattgatct
cgatttatcgctctatttatcac


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAAATCCGGCTCCAAACATTGTACT 680 361 13 Antisense
TTGTACTGTGCAATCAGGCGGCCAC 410 705 31 Antisense
CGCTCGATTCTTTTCGTTTTTCACG 349 253 57 Antisense
GGAGCCAGAAGTGTTTGTTCGACGA 101 523 89 Antisense
AGCTGTGCTATTCGAGACTTCATGG 557 75 163 Antisense
CTTCATGGAGCAACGTTGTGCCGCA 494 221 180 Antisense
TTGTGCCGCAAAATCGACGCGCTTC 342 707 195 Antisense
GCGCTTCTCGTGTTTTTACGCGATC 66 281 213 Antisense
TGAGGATTTTTTTGTGCTGCTTCTA 517 567 240 Antisense
GTGCTGCTTCTATACGTTCAAAATC 465 479 253 Antisense
CTCGATTTATCGCTCTATTTATCAC 683 231 311 Antisense
Sequence Source Affymetrix Proprietary Database